Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    23   1.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.7  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 121 GLVVAFNCGGRSTEPKGLFVLFEVELKLG 35
           GLVVA    G   EPKG + LF+  + LG
Sbjct: 68  GLVVAVLIAGGLEEPKG-YTLFKGFVHLG 95


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 122 WISCRFQLWRA*H*TKRIICF 60
           WI C F +W+    T +++ F
Sbjct: 217 WIMCYFCIWKGVKWTGKVVYF 237


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 122 WISCRFQLWRA*H*TKRIICF 60
           WI C F +W+    T +++ F
Sbjct: 270 WIMCYFCIWKGVKWTGKVVYF 290


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 447 NNQESESSRAETSNRDAL 500
           NNQ S +SR  TSN  ++
Sbjct: 614 NNQTSSASRENTSNTTSM 631


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 144 EESGKEKDKEASENRLNESKEN 209
           + + K+     ++NR N++K+N
Sbjct: 450 QNANKQNGNRQNDNRQNDNKQN 471


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,670
Number of Sequences: 438
Number of extensions: 2791
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)