Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303C06f
(338 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 69 3e-13
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 0.59
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 2.4
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 2.4
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 24 5.5
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 24 5.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 5.5
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha... 23 9.6
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr... 23 9.6
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po... 23 9.6
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 23 9.6
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 68.5 bits (160), Expect = 3e-13
Identities = 30/67 (44%), Positives = 47/67 (70%)
Frame = +1
Query: 100 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHL 279
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 280 DNNPALE 300
++ P LE
Sbjct: 68 NDMPELE 74
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 0.59
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 296 RAGLLSRWSLMALRIIVFFPMSTILEPR 213
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 2.4
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +1
Query: 148 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 294
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.4 bits (53), Expect = 2.4
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 243 KHNDAQSHQRPPGQQS-SPRGGARYPI 320
KH+D +HQ PP + + S + G+ PI
Sbjct: 166 KHDDTNNHQIPPPKPNFSSKAGSSSPI 192
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 24.2 bits (50), Expect = 5.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 149 FGYSSKSWMILTK*LDFQVALSSLP 75
F Y++K+W ++ K L QV +P
Sbjct: 317 FAYATKTWHLIEKNLPTQVGFLPIP 341
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 230 CSWEKTQ*CAKPSKTTWTTIQPS 298
CS EKT C++ K+ T+ +PS
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS 286
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 141 LVQELDDLNEVVRLPSSLVLPTHPG 67
L QE+ L +RLP+ L P++ G
Sbjct: 931 LTQEITQLGSNMRLPTKLTRPSNDG 955
>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 23.4 bits (48), Expect = 9.6
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = +1
Query: 4 PNSARGFCLVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGA 168
PN +K Y L+ + R+D +N+ K IQ + E +V A
Sbjct: 151 PNEPENTAEAIKQWNLGYIVLTSVDRDDLTDLGANHIAKTIQKIKEKAPHILVEA 205
>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 226
Score = 23.4 bits (48), Expect = 9.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = +3
Query: 195 ADPYLATWLQYRAHGKKHNDAQSHQ-----RPPGQQSS 293
A PY +L+ A KK ND + HQ PP +SS
Sbjct: 65 ATPYEENFLRAIAPVKKLNDTELHQTLYIEHPPNLESS 102
>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 793
Score = 23.4 bits (48), Expect = 9.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 29 LSLNFIEVPTPHYP 70
L LN E+PT HYP
Sbjct: 243 LKLNESEIPTYHYP 256
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 23.4 bits (48), Expect = 9.6
Identities = 7/16 (43%), Positives = 14/16 (87%)
Frame = +1
Query: 235 MGKNTMMRKAIKDHLD 282
+GK+T++++ +KDH D
Sbjct: 29 VGKSTLLKRLLKDHGD 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,582,885
Number of Sequences: 5004
Number of extensions: 29481
Number of successful extensions: 67
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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