Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C06f
         (338 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)         92   1e-19
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   1.7  
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)                 27   2.9  
SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)                      27   2.9  
SB_6695| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.9  
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.1  
SB_40918| Best HMM Match : DMAP_binding (HMM E-Value=0.48)             27   5.1  
SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                 27   5.1  
SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47)                    27   5.1  
SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34)                       26   6.8  
SB_24713| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.8  
SB_17030| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)                      26   9.0  
SB_15230| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)              26   9.0  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 43/58 (74%), Positives = 48/58 (82%)
 Frame = +1

Query: 127 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALE 300
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HL+NNP LE
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLE 58


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 141  VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKK 245
            VPKMFH     RG+ T+A  P + T +L+ R  G++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRR 3891


>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
          Length = 1011

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 186 TDAADPYLATWLQYRAHGKKHNDAQSHQRPPGQQSSPRGGARYPIRPI 329
           T  A+P L  + +++  G+   DA     P    +SP   +  P +PI
Sbjct: 482 TTGANPKLDAYQRWKLSGRVEMDATPEVSPKKTDTSPTSQSENPTKPI 529


>SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)
          Length = 152

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 196 QIRISLRGSSIVLMGKNTMMRKAIKDHLDNNP 291
           Q+R  L   S +L+G NT+++ A+ D L   P
Sbjct: 23  QVRPGLTALSTILLGANTVIQAALPDILAKTP 54


>SB_6695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +3

Query: 126 PTLGRVPKMFHRGCR*RGLATDAADPYLATWLQYRAH---GKKHNDAQSHQRPPGQQSS 293
           P   R+ KMF  G + RG++ D    +  T      H    KK    QS Q+  G +SS
Sbjct: 154 PDYSRLRKMFQNGLKKRGVSDDGRSVHF-TSPPANGHDDDSKKKKTVQSKQKAKGTKSS 211


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 241 KNTMMRKAIKDHLDNNPALEGGP 309
           K T++RK +K HLDN P L   P
Sbjct: 168 KVTIVRKELKSHLDNLPDLSKLP 190


>SB_40918| Best HMM Match : DMAP_binding (HMM E-Value=0.48)
          Length = 366

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 313 YRAPPRGLDCCPG 275
           YRAPPRG  C PG
Sbjct: 18  YRAPPRGRRCNPG 30


>SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 256

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/47 (25%), Positives = 18/47 (38%)
 Frame = +2

Query: 158 SWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWTTIQPS 298
           +W+   W R RC  S  R + P S   +       P    W   +P+
Sbjct: 197 AWLAFAWKRYRCHGSQVRLIKPPSTIVDGRSRAHAPFINYWPLFEPT 243


>SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47)
          Length = 715

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 234 HGKKHNDAQSHQRPPGQQSSPRGG 305
           +G     A SH  PP QQS+P  G
Sbjct: 171 YGLNQESAASHPCPPSQQSAPAPG 194


>SB_2163| Best HMM Match : TP2 (HMM E-Value=0.34)
          Length = 1074

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = +3

Query: 207 LATWLQYRAHGKKHNDAQSHQRPPGQQSSPRGGARYP 317
           LA W Q R  G  HND     R PG +   R   R P
Sbjct: 118 LAGWRQRRTGGY-HNDGSGCSRAPGSEWLGRTNQRSP 153


>SB_24713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 159 DETFWVLVQELDDLNEV-VRLPSSLVLPTHPG*CGVGTSMKFKDKTKPSCR 10
           D+ FW++V+EL+  NE+   + +   L       G G S + ++K K   R
Sbjct: 144 DDEFWLIVRELERYNELKAAIRARHGLAPRDEKSGKGPSPEAREKAKKRAR 194


>SB_17030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 24/81 (29%), Positives = 37/81 (45%)
 Frame = +1

Query: 28  LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRI 207
           +V  F  +P+ T       D A+W   Y+V I  L    P   IV    V + ++++ RI
Sbjct: 168 VVTTFRPAPHVTYCTEFWRD-ASWGVLYWVAIFILQYLVPLIIIVSQAAVIAVKLRKSRI 226

Query: 208 SLRGSSIVLMGKNTMMRKAIK 270
            +  SS   + K T +R  IK
Sbjct: 227 PMLSSSSETLYKKT-LRTRIK 246


>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
          Length = 1776

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 172  NVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIK 270
            +VGS + QQ+R  +  SS V  G+N  +RK ++
Sbjct: 1257 HVGSGRNQQVRQPVEVSSHVGSGRNQQVRKHVE 1289


>SB_15230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
 Frame = +3

Query: 270 RPPGQQS----SPRGGARYPI 320
           RPPG Q+     PRGGARY +
Sbjct: 32  RPPGDQAYRYRRPRGGARYQL 52


>SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)
          Length = 773

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 123 DLNEVVRLPSSLVLPTHPG*CG 58
           DL+  +++ ++L LP HPG CG
Sbjct: 99  DLSVALQVCTNLGLPLHPGKCG 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,417,436
Number of Sequences: 59808
Number of extensions: 244095
Number of successful extensions: 805
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)