Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C06f
         (338 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   115   8e-27
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    29   0.64 
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   1.5  
AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical...    27   2.6  
AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical...    27   2.6  
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    27   3.4  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    27   3.4  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z70780-4|CAD54137.2|  786|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AL110500-12|CAB60432.1|  362|Caenorhabditis elegans Hypothetical...    26   7.9  
AL034488-10|CAA22454.1|   84|Caenorhabditis elegans Hypothetical...    26   7.9  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  115 bits (277), Expect = 8e-27
 Identities = 47/76 (61%), Positives = 65/76 (85%)
 Frame = +1

Query: 73  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 252
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 253 MRKAIKDHLDNNPALE 300
           +RKA++ HL  NP+LE
Sbjct: 61  IRKALRGHLGKNPSLE 76


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 19/74 (25%), Positives = 37/74 (50%)
 Frame = +1

Query: 46  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 225
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 226 IVLMGKNTMMRKAI 267
               GKN ++  A+
Sbjct: 65  RFFFGKNNVISIAL 78


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 28  LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 141
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AL132876-33|CAI79187.1| 1133|Caenorhabditis elegans Hypothetical
           protein Y105E8A.26b protein.
          Length = 1133

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 263 PSKTTWTTIQPSRGGPVPNSPY 328
           PS   ++ +QPS   PVPN  Y
Sbjct: 854 PSNFDFSNVQPSNSNPVPNGRY 875


>AL132876-32|CAD56252.2| 1172|Caenorhabditis elegans Hypothetical
           protein Y105E8A.26a protein.
          Length = 1172

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 263 PSKTTWTTIQPSRGGPVPNSPY 328
           PS   ++ +QPS   PVPN  Y
Sbjct: 893 PSNFDFSNVQPSNSNPVPNGRY 914


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +1

Query: 46  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 216
           RS Y  +S   R D  +W   Y +K+ ++  +  +  +    N   ++++++R +L   R
Sbjct: 285 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 339

Query: 217 GSSIVLMGKNTMMRKAIKD 273
           G    L G+N ++ K I+D
Sbjct: 340 GKMADLEGRNLLLEKQIED 358


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +1

Query: 46  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 216
           RS Y  +S   R D  +W   Y +K+ ++  +  +  +    N   ++++++R +L   R
Sbjct: 268 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 322

Query: 217 GSSIVLMGKNTMMRKAIKD 273
           G    L G+N ++ K I+D
Sbjct: 323 GKMADLEGRNLLLEKQIED 341


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 204 YLATWLQYRAHGKKHNDAQSHQRPPGQQSSPRGGARYPIRPI 329
           YLA W Q R H ++ +  Q  Q  PG    PR    YP  P+
Sbjct: 781 YLA-WQQQRYHQQQQHQQQQQQGAPG---GPRPPYPYPGGPV 818


>Z70780-4|CAD54137.2|  786|Caenorhabditis elegans Hypothetical
           protein F46B6.5b protein.
          Length = 786

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 246 HNDAQSHQRPPGQQSSPRGGARYPIRPIVS 335
           HN+   +  P GQ  +PR GA    +P +S
Sbjct: 696 HNNIPVNNHPKGQSFAPRKGALLSAKPKLS 725


>Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical
           protein F46B6.5a protein.
          Length = 828

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 246 HNDAQSHQRPPGQQSSPRGGARYPIRPIVS 335
           HN+   +  P GQ  +PR GA    +P +S
Sbjct: 738 HNNIPVNNHPKGQSFAPRKGALLSAKPKLS 767


>AL110500-12|CAB60432.1|  362|Caenorhabditis elegans Hypothetical
           protein Y87G2A.11 protein.
          Length = 362

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 168 GTHDETFWVLVQELDDLNEVVRLPSSLVL 82
           GTH  T W + ++   L  V RLP+  V+
Sbjct: 91  GTHSITIWNIEEDKRTLETVSRLPTEQVM 119


>AL034488-10|CAA22454.1|   84|Caenorhabditis elegans Hypothetical
           protein Y54G11A.11 protein.
          Length = 84

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 2   CRIRHEGFVLSLNFIEVPTPHYPGWV 79
           CR+  E F  ++N++  P   Y  WV
Sbjct: 50  CRVCSEDFQTNINYLSEPIDVYSDWV 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,837,658
Number of Sequences: 27780
Number of extensions: 168171
Number of successful extensions: 551
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)