Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303C06f
(338 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 80 3e-16
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 80 4e-16
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 76 5e-15
At5g13260.1 68418.m01523 expressed protein 28 1.4
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 28 1.8
At3g11030.1 68416.m01331 expressed protein contains Pfam domain ... 26 5.6
At4g25070.1 68417.m03596 expressed protein ; expression supporte... 26 7.4
At4g23650.1 68417.m03405 calcium-dependent protein kinase, putat... 26 7.4
At1g47810.1 68414.m05319 F-box family protein contains F-box dom... 26 7.4
At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3) iden... 25 9.7
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 25 9.7
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 25 9.7
At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE... 25 9.7
At1g07330.1 68414.m00781 hypothetical protein 25 9.7
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 80.2 bits (189), Expect = 3e-16
Identities = 37/72 (51%), Positives = 51/72 (70%)
Frame = +1
Query: 73 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 252
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 253 MRKAIKDHLDNN 288
M+++++ H +N+
Sbjct: 61 MKRSVRIHSENS 72
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 79.8 bits (188), Expect = 4e-16
Identities = 37/71 (52%), Positives = 50/71 (70%)
Frame = +1
Query: 73 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 252
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 253 MRKAIKDHLDN 285
M+++++ H +N
Sbjct: 61 MKRSVRIHSEN 71
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 76.2 bits (179), Expect = 5e-15
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +1
Query: 88 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 267
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM++++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66
Query: 268 KDHLD 282
+ H D
Sbjct: 67 RIHAD 71
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 232 ARYWSHVARYGSAASVASPRYRH 164
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 197 RSVSRYVAPVSCSWEKTQ*CAKPSKTTWTTIQPSRGGPVPNSPY 328
+S +++V PVS + +KP T PS+ PVP SPY
Sbjct: 29 QSPAKHVPPVSRKMTSSSSRSKPKAPTHPPPNPSQEAPVP-SPY 71
>At3g11030.1 68416.m01331 expressed protein contains Pfam domain
PF03005: Arabidopsis proteins of unknown function
Length = 451
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 174 RGLATDAADPYLATWLQYRAHGKKHNDAQSHQRPPGQQSSP 296
R L ++ PY+ L R HG+ +D QS + P S P
Sbjct: 120 RPLYRESECPYIQPQLTCRTHGRPDSDYQSWRWRPDSCSLP 160
>At4g25070.1 68417.m03596 expressed protein ; expression supported
by MPSS
Length = 765
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 232 ARYWSHVARYGSAASVASPRYRH 164
ARYW ++G +++ RY H
Sbjct: 543 ARYWELAVQHGICEDISTSRYEH 565
>At4g23650.1 68417.m03405 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium-dependent protein
kinase [Marchantia polymorpha] gi|5162877|dbj|BAA81748;
contains protein kinase domain, Pfam:PF00069; contains
EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 529
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +3
Query: 237 GKKHNDAQSHQRPPGQQSSPRGGARYPIRPIVSR 338
G +H+ ++S PP SS G + ++P R
Sbjct: 2 GHRHSKSKSSDPPPSSSSSSSGNVVHHVKPAGER 35
>At1g47810.1 68414.m05319 F-box family protein contains F-box domain
Pfam:PF00646
Length = 351
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 32 SLNFIEVPTPHYPG 73
S I+ PTPHYPG
Sbjct: 215 SWRMIQCPTPHYPG 228
>At5g64330.1 68418.m08080 non-phototropic hypocotyl 3 (NPH3)
identical to non-phototropic hypocotyl 3 [Arabidopsis
thaliana] gi|6224712|gb|AAF05914, PMID:10542152
Length = 746
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 34 LKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYP 147
+ FH Y LSR G+ ++ ++S I +LD+ P
Sbjct: 63 MNFHLHKYPLLSRSGKMNRLIYESRDPDPTILILDDLP 100
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 19 GFCLVLKFHRSPYATLSRMGREDKATWKSN 108
G + + FH P MG+ED T+KSN
Sbjct: 960 GKIVSMPFHLKPKLYPDFMGKEDYQTYKSN 989
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 179 PTLSAPTMKHFGYSSKSWMILTK 111
P L+ T+ HF S++SW++L++
Sbjct: 63 PLLTMETVHHFLKSAESWLLLSQ 85
>At1g12360.1 68414.m01428 cytokinesis-related Sec1 protein (KEULE)
similar to cytokinesis-related Sec1 protein KEULE
[Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains
Pfam domain, PF00995: Sec1 family
Length = 666
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 7 NSARGFCLVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 141
N+ GF L H+ A R R+++A W+ + F +I+ L E
Sbjct: 483 NTPGGFTLKFDLHKKKRAV--RKERQEEAAWQLSRFYPMIEELIE 525
>At1g07330.1 68414.m00781 hypothetical protein
Length = 685
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 158 MKHFGYSSKSWMILTK*LDFQVALSSL 78
++HFGYSSK L+ D QV +S +
Sbjct: 412 VEHFGYSSKKGHKLSVESDLQVEVSEI 438
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,571,726
Number of Sequences: 28952
Number of extensions: 167450
Number of successful extensions: 435
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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