Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303C04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.56
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.73
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 25 5.2
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 25 5.2
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 6.8
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 25 6.8
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma... 25 9.0
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.7 bits (61), Expect = 0.56
Identities = 22/70 (31%), Positives = 36/70 (51%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
+S TP+ SLT+ S P +S + ++S+ ++ T + STV S + T +T
Sbjct: 2563 NSSTPITSLTALNSSTPITS-SSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTA 2621
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 2622 LNTSTPITSS 2631
Score = 26.2 bits (55), Expect = 3.0
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
+S TP+ S T+ S P +S + ++S+ ++ T + STV S + T +T
Sbjct: 859 NSSTPITSSTALNTSTPITS-SSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTA 917
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 918 LNTSTPITSS 927
Score = 26.2 bits (55), Expect = 3.0
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
+S TP+ S T+ S P +S + ++S+ ++ T + STV S + T +T
Sbjct: 1795 NSSTPITSSTALNTSTPITS-SSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTA 1853
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 1854 LNTSTPITSS 1863
Score = 25.8 bits (54), Expect = 3.9
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
+S TP+ S T+ S P + + ++S+ ++ T + STV S + T +T
Sbjct: 1639 NSSTPITSSTALNTSPPITSSTVVN-SSTPITSSTVVNTSTPITSSTVVNSSTPITSSTA 1697
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 1698 LNTSTPITSS 1707
Score = 25.8 bits (54), Expect = 3.9
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
+S TP+ S T S P + + T ++S+ +L + + STV S + T +T
Sbjct: 3367 NSSTPITSSTVVNSSTPITSSTALN-TSTPITSSSVLNSSTPITSSTVVNSSTPITSSTA 3425
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 3426 LNTSTPITSS 3435
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
++ TP+ S T+ S P +S + ++S+ ++ T + STV S + T +T
Sbjct: 1123 NTSTPITSSTALNTSTPITS-SSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTV 1181
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 1182 VNTSTPITSS 1191
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
++ TP+ S T S P + T ++S+ ++ T + STV S + T +T
Sbjct: 1159 NTSTPITSSTVVNSSTPITSSTVVN-TSTPITSSTVVNTSTPITSSTVVNSSTPITSSTV 1217
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 1218 LNTSTPITSS 1227
Score = 25.0 bits (52), Expect = 6.8
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
+S TP+ S T S P +S + ++S+ ++ T + STV S + T +T
Sbjct: 1387 NSSTPITSSTVLNSSTPITS-SSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTV 1445
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 1446 VNTSTPITSS 1455
Score = 25.0 bits (52), Expect = 6.8
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
++ TP+ S T S P + T ++S+ ++ T + STV S + T +T
Sbjct: 1471 NTSTPITSSTVVNSSTPITSSTVVN-TSTPITSSTVVNTSTPITSSTVVNSSTPITSSTV 1529
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 1530 LNTSTPITSS 1539
Score = 25.0 bits (52), Expect = 6.8
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
+S TP+ S T S P +S + ++S+ ++ T + STV S + T +T
Sbjct: 2227 NSSTPITSSTVLNSSTPITS-SSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTV 2285
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 2286 VNTSTPITSS 2295
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
+S TP+ S T S P +S + ++S+ ++ T + STV S + T +T
Sbjct: 1435 NSSTPITSSTVVNTSTPITS-SSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTV 1493
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 1494 VNTSTPITSS 1503
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
+S TP+ S + S P + + T ++S+ +L + + STV S + T +T
Sbjct: 2143 NSSTPITSSSVLNSSTPITSSTALN-TSTPITSSSVLNSSTPITSSTVVNSSTPITSSTV 2201
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 2202 VNTSTPITSS 2211
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
+S TP+ S T S P +S + ++S+ ++ T + STV S + T +T
Sbjct: 2659 NSSTPITSSTVVNTSTPITS-SSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTA 2717
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 2718 LNTSTPITSS 2727
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
+S TP+ S T S P +S + ++S+ ++ T + STV S + T +T
Sbjct: 2887 NSSTPITSSTVVNTSTPITS-SSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTA 2945
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 2946 LNTSTPITSS 2955
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
+S TP+ S T S P +S + ++S+ ++ T + STV S + T +T
Sbjct: 2983 NSSTPITSSTVVNTSTPITS-SSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTA 3041
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 3042 LNTSTPITSS 3051
Score = 24.6 bits (51), Expect = 9.0
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +1
Query: 271 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATY 450
+S TP+ S T S P +S + ++S+ ++ T + STV S + T +T
Sbjct: 3247 NSSTPITSSTVVNTSTPITS-SSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTT 3305
Query: 451 WRTSTSIETS 480
TST I +S
Sbjct: 3306 LNTSTPITSS 3315
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 0.73
Identities = 19/73 (26%), Positives = 41/73 (56%)
Frame = +1
Query: 262 ASSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETV 441
+SSSS +P + ++ S + S+ + +SS+ + TSS ST+++S S +
Sbjct: 293 SSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS 352
Query: 442 ATYWRTSTSIETS 480
+++ T++S ++S
Sbjct: 353 SSFSSTTSSSKSS 365
Score = 27.5 bits (58), Expect = 1.3
Identities = 24/83 (28%), Positives = 43/83 (51%)
Frame = +1
Query: 262 ASSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETV 441
+SSSS + +IS +S S PT T +SS+ + TS+ ST+++S S +
Sbjct: 264 SSSSSSSSIISSSSSSSSSPTS-------TSSTISSSSSSSSSPTSTSSTISSSSSSSSS 316
Query: 442 ATYWRTSTSIETSRC*SNFKTEN 510
+ +S+S+ +S S+ T +
Sbjct: 317 FSSTLSSSSMSSSSSFSSSPTSS 339
Score = 25.8 bits (54), Expect = 3.9
Identities = 22/79 (27%), Positives = 39/79 (49%)
Frame = +1
Query: 268 SSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVAT 447
SSS + ++ +S S +S+ T LSS+ T ++SS S+ S S + ++
Sbjct: 223 SSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSS 282
Query: 448 YWRTSTSIETSRC*SNFKT 504
TS++I +S S+ T
Sbjct: 283 PTSTSSTISSSSSSSSSPT 301
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 300 ILALLRAYRPRSINPLDEVPSKLRAVVV 383
I +L +Y P+ INP +E+P R + +
Sbjct: 9 IYKVLYSYEPQEINPGEEIPENEREISI 36
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 129 SLVQFLRTQLNEFGIINTTPDF----ANFFAAPSSIKSAPSLAGEATWSFFKQL 278
SLV++LR +L + + + +PDF F S+ S + WSF + +
Sbjct: 582 SLVRYLRFELMKTSLASLSPDFDCIGLQFVVGVSASSHLASQWKDEVWSFTRSI 635
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 99 VYQKLITAVTSLVQFLRTQLNEFGIINTTPD 191
+Y+ ++TSL+Q +QL+++ +I PD
Sbjct: 222 IYEIFKYSITSLLQIPVSQLSQYSVIFIVPD 252
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.0 bits (52), Expect = 6.8
Identities = 21/97 (21%), Positives = 36/97 (37%)
Frame = +3
Query: 27 EAIHSYVQKKLRNQKCDDEKELRVVYQKLITAVTSLVQFLRTQLNEFGIINTTPDFANFF 206
E I + + ++ C D + YQK + L R NE + + FF
Sbjct: 883 EPIQNPLLLNCKHACCGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDV------YKPFF 936
Query: 207 AAPSSIKSAPSLAGEATWSFFKQLYSGDFPDILALLR 317
+ +S + E W ++ +L S +L LR
Sbjct: 937 VKNNGTQSTLLVGEEVKWKYWNRLQSVKLNGLLGQLR 973
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +1
Query: 268 SSSCTPVISLTSWPFSEPTD 327
S +C+P + T WP ++P+D
Sbjct: 210 SYACSPGMLKTQWPSTQPSD 229
>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = -1
Query: 215 WSSEEVRKVGRRVDNAKFIQLSPQELDERCNSCDQLLIDHAELLLIIAFLVTEFLL 48
WSS E+R + R + KF+ E+ + + + A+LL I ++ ++ L
Sbjct: 316 WSSREMRAILRGLQGLKFVGADLVEVAPAYDVAEITSLAGAQLLFDIVSMMVKYPL 371
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,679
Number of Sequences: 5004
Number of extensions: 36182
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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