Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303C04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159... 38 0.004
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 30 0.98
05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887... 29 3.0
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323... 28 4.0
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 28 4.0
12_01_0456 + 3587244-3587440,3587595-3587766,3587877-3587999,358... 28 5.2
11_06_0239 + 21637451-21638098,21638172-21638714 28 5.2
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 28 5.2
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 28 5.2
11_06_0553 - 24920428-24921057,24921149-24921276,24921372-249214... 27 6.9
11_04_0119 - 13645068-13645436 27 6.9
10_08_1046 + 22542074-22544749,22544837-22545544 27 9.1
05_04_0062 + 17607290-17608852 27 9.1
04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243 27 9.1
04_03_1002 - 21617339-21617362,21618476-21618565,21618755-216194... 27 9.1
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 27 9.1
>02_05_0167 -
26415319-26415494,26415591-26415840,26415909-26415974,
26416457-26416600,26416813-26416868,26416966-26417101,
26417190-26417277,26417379-26417482,26418515-26419180,
26419337-26419432,26419974-26420242,26420334-26420489,
26421153-26421192
Length = 748
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -1
Query: 302 DVREITGVQLLEEAPRCLSSKRRSGLN*AWSSEEVRKVGRRVDNAKFIQLSP 147
DV ++GV L EE + LS+ + +W+SEE RK+ + D F+Q P
Sbjct: 463 DVTAVSGVNLREEEEQLLSAPKEE----SWASEEARKIAQEEDGKLFLQKGP 510
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 270 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVV 380
++L +GDF L LL++Y P +I+ L + +KLR +
Sbjct: 426 RRLLAGDFTANLKLLQSYPPTNIDHLLHIANKLRGPI 462
>05_05_0114 -
22488172-22488279,22488414-22488511,22488616-22488784,
22489310-22489377,22490485-22490521,22490660-22490741,
22490845-22490903
Length = 206
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 207 AAPSSIKSAPSLAGEATWSFFKQLYSGDFPDILAL 311
A PSS+ S+ ++AG+ TW+ + +++ IL L
Sbjct: 32 APPSSVHSSYAVAGDLTWAILETIHAAIGHQILTL 66
>01_06_1732 -
39531577-39531726,39531809-39531925,39532175-39532354,
39532704-39532802,39533571-39533675,39534046-39534138,
39534243-39534326
Length = 275
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 270 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKL 368
K+L +GDF L LL+ Y P +I+ L V +KL
Sbjct: 242 KRLLAGDFTSNLKLLQNYPPTNISHLLYVANKL 274
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 384 NGQHIFTFDGRHLTFPGNCRYVLAHEHVDR 473
NGQH+ +D R F G RY H H+ R
Sbjct: 302 NGQHV-DYDQRPDIFRGTIRYASVHAHLGR 330
>12_01_0456 +
3587244-3587440,3587595-3587766,3587877-3587999,
3588165-3588338,3588537-3588647,3588737-3588870,
3588945-3589038,3589122-3589220,3590494-3590630,
3590709-3590803,3590922-3591045,3591122-3591209,
3592867-3593043,3593130-3593167,3593398-3593485,
3594101-3594209,3594374-3594443,3594520-3594667,
3595069-3595197,3595292-3595417,3595596-3595658,
3595952-3596197
Length = 913
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 50 EETP*PEMR**EGAPRGLSEVDHSCYIARPVLEDSAE 160
EE PE+R E A + +H+C + RP+ D E
Sbjct: 602 EENEEPEVRITEAAEKSAVTGEHTCMVLRPLNSDDIE 638
>11_06_0239 + 21637451-21638098,21638172-21638714
Length = 396
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 476 VSIDVLVRQYVATVSWEGEVATVEREDVLTVHN 378
+S+D L VA + EGE AT R V+T H+
Sbjct: 100 LSVDPLAVSLVAAFAGEGETATRRRPVVVTCHS 132
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 270 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVVVN 386
++L +GDF + LL+ Y P +I+ L + ++LR V +
Sbjct: 448 RRLLAGDFTANIQLLQHYPPTNIDHLLHIANRLRGSVAS 486
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -1
Query: 413 TVEREDVLTVHNNSAELRRHFV*WVDATRSVGSEKGQDVREITGVQLLEEAPRCLSSKRR 234
T R++ L S +++R F + ++G ++ VQLLE A C S R
Sbjct: 727 TGHRDEALAKAEQSIKIQRSFEAFFLKAYALGDSSLDTESSLSVVQLLEHANSCASDNLR 786
Query: 233 SG 228
G
Sbjct: 787 KG 788
>11_06_0553 -
24920428-24921057,24921149-24921276,24921372-24921409,
24921522-24921734,24921906-24921998,24922089-24922276,
24922396-24922502,24922614-24922775,24922870-24922953,
24923060-24923168,24923340-24923468,24923504-24923556,
24923654-24923759,24924082-24924189
Length = 715
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +3
Query: 6 QESRDLAEAIHSYVQKK---LRNQKCDDEKELRVVYQKLITAVTSL 134
+ S++L+E I QK+ L + CD E+EL+ + +++ A TSL
Sbjct: 499 ESSKELSEDIKKLKQKRIAELDKEICDAEQELKDLNEQIKRAETSL 544
>11_04_0119 - 13645068-13645436
Length = 122
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 479 EVSIDVLVRQYVATVSWEGEVATVEREDVLTVHNN 375
+++I VLV + VSWE + +E V+ + N
Sbjct: 70 DIAIQVLVAPLIIAVSWEMIIGLIEPSQVMVLQPN 104
>10_08_1046 + 22542074-22544749,22544837-22545544
Length = 1127
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 188 GRRVDNAKFIQLSPQELDERCNSCD 114
GRR D+ +FI S +LD +S D
Sbjct: 27 GRRTDSGRFISYSRDDLDSEISSVD 51
>05_04_0062 + 17607290-17608852
Length = 520
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -3
Query: 159 SAESSRTGRAM*QL*STSDRPRGAPSHHRISGYGVSS 49
SA SSR+ R+ S S G P +HR + Y SS
Sbjct: 50 SASSSRSARSSYYSSSMSSNASGGPHNHRYAPYSNSS 86
>04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243
Length = 403
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Frame = +3
Query: 210 APSSIKSAPS---LAGEATWSFFKQLYSGDFP--------DILALLRAYRPRSINPLDEV 356
A SS+ +A + L G+A L SG+FP I A +P ++ +DE
Sbjct: 270 AVSSLAAAAASAVLCGDALHQIAFPLVSGEFPWTEAFNAVSIQLAALATKPSEVDAVDEA 329
Query: 357 PSKLRAVVVNG 389
KL++V+ NG
Sbjct: 330 VGKLKSVLDNG 340
>04_03_1002 -
21617339-21617362,21618476-21618565,21618755-21619432,
21619536-21619772,21619849-21619896,21619995-21620045,
21620301-21620426,21620557-21620697,21621165-21621401,
21622467-21622571,21622812-21622982,21623306-21623380,
21623754-21623936,21624151-21624297,21624365-21624472,
21624605-21624709,21625109-21625213,21625322-21625381,
21625512-21625579,21625876-21625954,21626208-21626267,
21626445-21626498,21626834-21626886,21627405-21627494,
21628265-21628362,21628464-21628852
Length = 1193
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 3 TQESRDLAEAIH--SYVQKKLRNQKCDDEKELRVVYQKLITAVTSLVQFLRTQLNEFGII 176
++E+ + + H +++ K K DEK L YQK IT + +Q LR + G I
Sbjct: 399 SEETHNTLKFAHRSKHIEIKASQNKIIDEKSLIKKYQKEITCLKEELQQLRRGMMGNGYI 458
Query: 177 NTT 185
T
Sbjct: 459 PPT 461
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 306 ALLRAYRPRSINPLDEVPSKLRAV 377
AL AY+ +S+ PLD P K RA+
Sbjct: 68 ALREAYKKKSLLPLDLRPKKTRAI 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,071,020
Number of Sequences: 37544
Number of extensions: 257407
Number of successful extensions: 816
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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