Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26224| Best HMM Match : VWD (HMM E-Value=0)                         39   0.003
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   37   0.012
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   29   1.8  
SB_14435| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_42638| Best HMM Match : Filament (HMM E-Value=5.5)                  28   5.4  
SB_58526| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)                   28   5.4  
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_29615| Best HMM Match : OstA (HMM E-Value=6.2)                      27   7.1  
SB_21448| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)                   27   9.4  
SB_1133| Best HMM Match : C2 (HMM E-Value=2.5e-05)                     27   9.4  

>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
          Length = 736

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 390 QHIFTFDGRHLTFPGNCRYVLAHEHVDRNFTLLIQLQNGK 509
           +H  TFDGRH+ F G C Y LA + +  +    + +QN K
Sbjct: 222 RHYRTFDGRHIDFIGKCSYTLAQDCIPGSDQFSLHVQNDK 261



 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 393 HIFTFDGRHLTFPGNCRYVLAHEHVDRNFTLLI 491
           H  +FDG+  TF G C+Y+L  E +   F++ I
Sbjct: 576 HFVSFDGKAFTFGGKCQYLLT-ESLASGFSVTI 607


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 36.7 bits (81), Expect = 0.012
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +3

Query: 324  RPRSINPLDEVPSKLRAVVVNGQHIFTFDGRHLTFPG----NCRYVLAHEHVDRNFTLLI 491
            RPR+  P    P    A++    H+ TFD  +  FPG     C YVLA +  D  FT++ 
Sbjct: 1632 RPRNWVP----PFNSTAMIFGKPHVSTFDSLYYRFPGYNKPECTYVLARDVRDNKFTIMS 1687

Query: 492  Q 494
            Q
Sbjct: 1688 Q 1688


>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1530

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 351 EVPSKLRAVVVNGQHIFTFDGRHLTFPGNCRYVLA-HEHVDRNFT 482
           + P      +V   H  TFD R  +  G C YVL+ H H   + T
Sbjct: 843 DTPCSGTCTMVGNSHFTTFDSRSYSMHGQCDYVLSEHCHFSNDTT 887


>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 393 HIFTFDGRHLTFPGNCRYVLA 455
           H  TFDGR  +F G C YV++
Sbjct: 33  HYKTFDGRLYSFQGGCNYVMS 53


>SB_14435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = +2

Query: 338 QPTRRSAV*APRCCCERSTHLHVRRSPPHLPRKLSLRIGARARR*KLHAANPTSKRKTQ 514
           Q +RR+A   P    +R       R  P  PR     +GAR R  +     P  +R  Q
Sbjct: 22  QQSRRTARSPPHSTTDREDGTLAERHAPQAPRSALTDVGARLREVRRSGNQPERQRSIQ 80


>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +1

Query: 355 CRLSSALLL*TVNTSSRSTVATSPSQETVATYWRTSTSIETSR 483
           CR ++     T NTSS S V+T+ S  TVA   RT TS  ++R
Sbjct: 135 CRDATVYRFVTYNTSSSSNVSTTRSPVTVA---RTITSQSSNR 174


>SB_42638| Best HMM Match : Filament (HMM E-Value=5.5)
          Length = 252

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/61 (22%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
 Frame = +3

Query: 45  VQKKLRNQK---CDDE-KELRVVYQKL---ITAVTSLVQFLRTQLNEFGIINTTPDFANF 203
           ++KKL  +K   C++E K++R+   ++   + ++      L+ ++ E  ++NT  ++ +F
Sbjct: 186 MEKKLEEEKLDFCENELKDMRMFLAQMERDLASIRDQTDSLQDEITEIRVLNTAAEYEDF 245

Query: 204 F 206
           F
Sbjct: 246 F 246


>SB_58526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/61 (22%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
 Frame = +3

Query: 45  VQKKLRNQK---CDDE-KELRVVYQKL---ITAVTSLVQFLRTQLNEFGIINTTPDFANF 203
           ++KKL  +K   C++E K++R+   ++   + ++      L+ ++ E  ++NT  ++ +F
Sbjct: 186 MEKKLEEEKLDFCENELKDMRMFLAQMERDLASIRDQTDSLQDEITEIRVLNTAAEYEDF 245

Query: 204 F 206
           F
Sbjct: 246 F 246


>SB_32204| Best HMM Match : wnt (HMM E-Value=8.2e-31)
          Length = 731

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = -1

Query: 140 LDERCNSCDQLLIDHAELLLIIAFLVTEFLLNVGVDCFGQISAF 9
           LD   ++CDQ+L+++    +IIA  + +  +N  VD F ++ +F
Sbjct: 299 LDFMSDTCDQILLENPNAKIIIAGDINQLNINKDVD-FVRVFSF 341


>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +1

Query: 265 SSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRST-VATSPSQETV 441
           +S+S TP I+ T    +  T L+A+T        + L+  T + ++++T +AT+PS  T 
Sbjct: 691 TSTSQTPPIATTP-SLTTQTTLIATT--PSLTTQTTLIATTPSLTTQTTLIATTPSLTTQ 747

Query: 442 ATYWRTSTSIET 477
            T   T+ S+ T
Sbjct: 748 TTLIATTPSLTT 759


>SB_29615| Best HMM Match : OstA (HMM E-Value=6.2)
          Length = 343

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 140 LDERCNSCDQLLIDHAELLLIIAFLVTEF 54
           LD   + CDQ+L+++    +IIA  ++EF
Sbjct: 48  LDFMSDKCDQILLENPNAKIIIAVNISEF 76


>SB_21448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 543

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 93  RVVYQKLITAVTSLVQFLRTQLNEFGII-NTTPDF 194
           RV+Y+ + T+V SL++ LRT     GI+ N  P+F
Sbjct: 125 RVLYRSIHTSVESLIE-LRTAYRSSGILSNCVPNF 158


>SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)
          Length = 1033

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 398  LHVRRSPPHLPRKLSLRIGARARR*KLHAANP 493
            L VR+ PP L RKL+ R+    +R  L    P
Sbjct: 978  LRVRKDPPPLKRKLAQRVAIPPKRIALGEVTP 1009


>SB_1133| Best HMM Match : C2 (HMM E-Value=2.5e-05)
          Length = 142

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 362 RRHFV*WVDATRSV-GSEKGQDVREITGVQL 273
           RRHF  W+DA + + G  K  DV ++   QL
Sbjct: 8   RRHFKEWMDAVQKICGKSKSLDVIDVDVKQL 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,971,343
Number of Sequences: 59808
Number of extensions: 288889
Number of successful extensions: 960
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)