Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.5  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   5.8  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   5.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 174  INTTPDFANFFAAPSSIKSA 233
            +N  PD  N +A P+  KSA
Sbjct: 1467 LNHYPDLHNLYAVPTDKKSA 1486


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +3

Query: 15  RDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLI 116
           +DL + +H+++Q   +  K  +EK  R + +  +
Sbjct: 49  KDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFL 82


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/34 (23%), Positives = 19/34 (55%)
 Frame = +3

Query: 15  RDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLI 116
           +DL + +H+++Q   +  K  +EK  R + +  +
Sbjct: 32  KDLFDNVHNHIQNIFKIIKSTNEKITRYIIRMFL 65


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 308 GQDVREITGVQLLEEAPRCLSS 243
           GQ+V     V LLE A RCL +
Sbjct: 144 GQEVIYTACVGLLERAFRCLGN 165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,491
Number of Sequences: 438
Number of extensions: 2891
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)