Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C04f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14520.1 68418.m01702 pescadillo-related similar to pescadill...    29   2.5  
At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2...    28   3.3  
At5g52280.1 68418.m06488 protein transport protein-related low s...    28   4.4  
At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein lo...    28   4.4  
At3g13670.1 68416.m01722 protein kinase family protein contains ...    28   4.4  
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /...    28   4.4  
At2g40130.2 68415.m04936 heat shock protein-related contains sim...    27   5.8  
At5g65710.1 68418.m08270 leucine-rich repeat transmembrane prote...    27   7.7  

>At5g14520.1 68418.m01702 pescadillo-related similar to pescadillo
           [Zebrafish, Danio rerio] SWISS-PROT:P79741
          Length = 590

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -1

Query: 521 KSLGFSVLKLD*QREV---SIDVLVRQYVATVSWEGEVATVEREDVLTVHN 378
           KSL F  LK    REV   S+ +++  +   VSWEGE A  + +D    H+
Sbjct: 334 KSL-FKDLKFFLSREVPRESLQLVITAFGGMVSWEGEGAPFKEDDESITHH 383


>At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2.1)
           (GLR3) plant glutamate receptor family, PMID:11379626
          Length = 909

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -2

Query: 226 LIELGAAKKFAKSGVVLIMPNSFS*VLKNWTSDVTAVIN 110
           L+EL A++ FAK+  + +M   +  +L N  +DV +++N
Sbjct: 229 LVELLASRFFAKATEIGLMKQGYVWILTNTITDVLSIMN 267


>At5g52280.1 68418.m06488 protein transport protein-related low
           similarity to  SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 853

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 3   TQESRDLAEAIHSYVQKKLRNQKCDDEKELRVVYQKLITAVTSLVQFLRTQLNE 164
           TQE   L E  +  V  KL  Q+C + ++  +  + +I  + S ++ L  +L +
Sbjct: 458 TQEYESLKEENYKNVSSKLEQQECSNAEDEYLDSKDIIDELKSQIEILEGKLKQ 511


>At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein low
           similarity to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 449

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 270 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLR 371
           ++L +GDF   L LL+ Y P +I+ +  V  KLR
Sbjct: 414 RRLLAGDFTSNLKLLQNYPPTNISHMLYVADKLR 447


>At3g13670.1 68416.m01722 protein kinase family protein contains
           Pfam domains, PF00069: Protein kinase domain
          Length = 703

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 384 NGQHIFTFDGRHLTFPGNCRYVLAHEHVDR 473
           +GQH+  +D R   F G  RY  AH H+ R
Sbjct: 302 SGQHV-EYDQRPDMFRGTVRYASAHAHLGR 330


>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
           (Alpha-tocopherol associated protein) (TAP) (bTAP)
           (Fragment) (SP:P58875)  {Bos taurus}
          Length = 683

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 174 INTTPDFANFFAAPSSIKSAPSLAGEATWSFFKQL---YSGDFPDILA 308
           ++ +P+  + F   S  ++AP L   A W F K+    +  ++P+ +A
Sbjct: 465 LDFSPEAKSSFVFVSDFRNAPGLGQRALWQFIKRAVKQFEDNYPEFVA 512


>At2g40130.2 68415.m04936 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 910

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
 Frame = -1

Query: 482 REVSIDVLVRQYVATVSWEGEVATVE--REDVLTVHNNSAELRRHFV*WVDATRSVGSEK 309
           REV I   +  +V T S +G   T     E +L V     E+R   V  +   RSV    
Sbjct: 677 REVGIGNTI--FVMTSSSQGSATTTSYSEEKLLRVKGRQVEIRIETVSSLPMVRSVYGPT 734

Query: 308 GQDVREITGVQLLEEAPRCLSSKRR 234
             + R++ G+  L+E    + S +R
Sbjct: 735 SVNKRKLMGLGNLQETKDTVESVKR 759


>At5g65710.1 68418.m08270 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 993

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 111 TSDRPRGAPSHHRISGYGVSSERRSGLLRPDLCF 10
           T   PR       IS + VS+ R SG L P LC+
Sbjct: 352 TGTLPRNLGKFSEISEFDVSTNRFSGELPPYLCY 385


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,363,548
Number of Sequences: 28952
Number of extensions: 198011
Number of successful extensions: 635
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)