Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    32   0.045
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   3.9  
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    26   3.9  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    25   5.2  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   6.8  

>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +2

Query: 137 RKLLRYFKKINVDAKEMRGVGIQVTKLVLIIKQQSK 244
           +K+   +K INVD  ++RG+G+Q  K   IIK  SK
Sbjct: 606 KKVTSMYKTINVDPGDVRGIGLQALK---IIKDNSK 638


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 300 SLLIFMIVGLLQRNLLMAPLLCCLIISTNFVTCIPTPLI 184
           S LI     L    L M  L   L+IST  +T +P PL+
Sbjct: 346 SYLILYYFFLDISKLQMTSLTFFLLISTTILTLVPAPLV 384


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 20  SGLKKHQLRLQSLWVMDIVMSLINQIIYLQ 109
           SGL   Q++L +LW     + +   +IYLQ
Sbjct: 239 SGLTSSQIQLPNLWNFFATLLVFGVVIYLQ 268


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 297 LLIFMIVGLLQRNLLMAPLLCCLIISTNFVTCIPTPLISLASTFI 163
           L+  MI  +LQ    +AP + CL+I   F  C     ++LA   I
Sbjct: 171 LVTLMIYIVLQIPCALAPNIACLLIVRFFCGCFGCTPLTLAGGVI 215


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 312 SVLDSLLIFMIVGLLQRNLLMAPLLCCLIISTNFVTCI 199
           SVL  +L+  +  L+  NL +  L   L +S  F TC+
Sbjct: 148 SVLSGVLLISLPTLILLNLCILKLAAKLHLSALFTTCL 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,917
Number of Sequences: 5004
Number of extensions: 23836
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)