Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0436 - 28971733-28972020,28972178-28972525,28972738-289729...    32   0.32 
06_01_0958 - 7380021-7380401,7380771-7381046,7381184-7381582           28   4.0  
07_03_0716 + 20905041-20905851,20906644-20906825,20907117-209073...    27   6.9  
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250...    27   6.9  

>02_05_0436 -
           28971733-28972020,28972178-28972525,28972738-28972920,
           28973096-28973170,28973238-28973392,28973540-28974043,
           28975889-28975964
          Length = 542

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 16  MVRAEEAPVETAKFMGHGYCNVINKSNNLPAATNDVEVLTQETIE 150
           M +  ++ +E  KFM HG+ N +    N     NDV V+T   +E
Sbjct: 20  MDQEPDSSLEILKFMSHGHLNDLKSCQNKLKIPNDVGVMTYNGLE 64


>06_01_0958 - 7380021-7380401,7380771-7381046,7381184-7381582
          Length = 351

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 321 ETTSVLDSLLIFMIVGLLQRNLLMAPLLC 235
           ET S+LD +   +  GLL RN+++A L C
Sbjct: 2   ETKSILDKVTQEVYTGLLPRNMVIADLGC 30


>07_03_0716 +
           20905041-20905851,20906644-20906825,20907117-20907330,
           20907416-20907653,20907905-20908058,20908190-20908461,
           20908703-20908808
          Length = 658

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 513 LASTPDLLMARFFSFCSKVSALGGLP 436
           L STP+LL+A+   FCS  + +  +P
Sbjct: 12  LLSTPNLLVAKQLPFCSNANTITHMP 37


>06_03_1208 -
           28422941-28423139,28423854-28424434,28424705-28425078,
           28425235-28425339,28425902-28425970,28426084-28426156,
           28426395-28426478,28426616-28426648,28426731-28426790,
           28427535-28427627,28427851-28427970,28428804-28428886,
           28428887-28429007,28429114-28429164,28429245-28429333,
           28429429-28429561,28430220-28430354,28430581-28430952,
           28431679-28431796,28431883-28431998,28432131-28432442
          Length = 1106

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 43  ETAKFMGHGYCNVINKSNNLPAATNDVEVLTQETIEIF 156
           E  KFMG G C  +++S  +  AT++   L +   ++F
Sbjct: 622 EPIKFMGCGDCETVSRSMTIAGATDNPVTLQRIAKQLF 659



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 155 FKKINVDAKEMRGVGIQVTKL 217
           F    VD KE+RGVG+++++L
Sbjct: 659 FSSFCVDVKEVRGVGLKISRL 679


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,381,608
Number of Sequences: 37544
Number of extensions: 130730
Number of successful extensions: 316
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)