Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C03f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17357| Best HMM Match : IMS (HMM E-Value=0)                         42   4e-04
SB_18188| Best HMM Match : SRP54 (HMM E-Value=0)                       29   3.1  
SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32)                   28   4.1  

>SB_17357| Best HMM Match : IMS (HMM E-Value=0)
          Length = 990

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 20/49 (40%), Positives = 30/49 (61%)
 Frame = +1

Query: 7   VKLMVRAEEAPVETAKFMGHGYCNVINKSNNLPAATNDVEVLTQETIEI 153
           +KL VR E AP+   KFMGHG C+ + +S  L   T+D  V+ +E + +
Sbjct: 522 LKLKVRQEGAPMPR-KFMGHGICDNVARSATLVEPTDDTSVIARECLNL 569



 Score = 31.5 bits (68), Expect = 0.44
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 137 RKLLRYFKKINVDAKEMRGVGIQVTKL 217
           R+ L   K +N+ A + RG+GIQV+KL
Sbjct: 564 RECLNLLKTLNIPAHDFRGLGIQVSKL 590


>SB_18188| Best HMM Match : SRP54 (HMM E-Value=0)
          Length = 410

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 492 LMARFFSFCSKVSALGGLPRLFPGGDLVLSV 400
           L++++  F   V  +GG+  LF GGD+  +V
Sbjct: 251 LLSQYQKFAQMVKKMGGIKGLFKGGDMTRNV 281


>SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32)
          Length = 584

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 7   VKLMVRAEEAPVETAKFMGHGYCNVINKSNNLPAATNDVEVLTQETIEI 153
           VK + RA E  VE +K     Y  V+N  + +PAA    + L  + +++
Sbjct: 389 VKFLKRAVEKTVEISKQRALEYRTVVNDEDRVPAAGEFDDTLRGQVVKL 437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,094,997
Number of Sequences: 59808
Number of extensions: 159286
Number of successful extensions: 333
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)