Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44750.1 68418.m05485 UMUC-like DNA repair family protein / B...    40   0.001
At1g34575.1 68414.m04297 FAD-binding domain-containing protein s...    30   0.82 
At5g60070.1 68418.m07532 ankyrin repeat family protein contains ...    27   5.8  

>At5g44750.1 68418.m05485 UMUC-like DNA repair family protein / BRCT
           domain-containing protein low similarity to Rev1S [Homo
           sapiens] GI:12483635; contains Pfam profiles PF00817:
           ImpB/MucB/SamB family, PF00533: BRCA1 C Terminus (BRCT)
           domain
          Length = 1102

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/50 (38%), Positives = 35/50 (70%)
 Frame = +1

Query: 7   VKLMVRAEEAPVETAKFMGHGYCNVINKSNNLPAATNDVEVLTQETIEIF 156
           +K+  R ++A  E  K+MG G C+ +++S  +PAAT+D+EVL + + ++F
Sbjct: 659 LKIKKRKKDAE-EPTKYMGCGDCDNLSRSITVPAATDDIEVLQRISKKLF 707



 Score = 32.3 bits (70), Expect = 0.20
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
 Frame = +2

Query: 149 RYFKKINVDAKEMRGVGIQVTKLVLIIKQQSKGA--ISKFLCNKPTIINIKRE 301
           + F    +D KE+RGVG+QV+KL       +KG+  +  +L + P ++ I+++
Sbjct: 705 KLFGSFCLDVKEVRGVGLQVSKLD-SADPSNKGSRTLKSWLSSAPAVVQIEQD 756


>At1g34575.1 68414.m04297 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 1   RAVKLMVRAEEAPVETAKFMGHGYCNVINKSNNL 102
           RA+++  + + A V++   +G  Y NV NKSNNL
Sbjct: 133 RAIEIDPKLDTAWVQSGATLGEIYYNVANKSNNL 166


>At5g60070.1 68418.m07532 ankyrin repeat family protein contains
           ankyrin repeat domains, Pfam:PF00023
          Length = 548

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 4   AVKLMVRAEEAPVETAKFMGHGYCNVINKSNNLPAA 111
           + K + RA E P++TA+  GH     + K+  +P+A
Sbjct: 273 STKAINRAGETPLDTAEKTGHPQIAAVLKTRGVPSA 308


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,959,942
Number of Sequences: 28952
Number of extensions: 116692
Number of successful extensions: 297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)