Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...   276   1e-75
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   1.7  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   3.9  
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce...    25   5.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.8  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    25   9.0  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    25   9.0  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    25   9.0  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    25   9.0  

>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score =  276 bits (677), Expect = 1e-75
 Identities = 129/174 (74%), Positives = 147/174 (84%), Gaps = 1/174 (0%)
 Frame = +2

Query: 2   FSDQVVSGQWKGYTGKAITDVINIGIGGSDLGPLMVTEALKPYAN-HLKVHFVSNIDGTH 178
           FSD V SG WKGYTGK I  ++N+GIGGSDLGP+MVTEALKPY   +L++HFVSNIDGTH
Sbjct: 137 FSDAVRSGAWKGYTGKPIKSIVNVGIGGSDLGPVMVTEALKPYGQENLELHFVSNIDGTH 196

Query: 179 LAEVLKKLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAE 358
           LAE LKK +PET LF+IASKTFTT ET TNA SAK WFL SAKDPS VA+HFVALSTN +
Sbjct: 197 LAEALKKCDPETTLFLIASKTFTTAETCTNAKSAKDWFLASAKDPSHVAKHFVALSTNEK 256

Query: 359 KVTAFGIDANNMFGFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANFMDQ 520
           +VTAFGI A NMF F DWVGGRYS+WSAIGLS++LYIG+ENFE  L GA+ MD+
Sbjct: 257 EVTAFGISAQNMFEFSDWVGGRYSVWSAIGLSVALYIGYENFEAFLSGAHAMDE 310


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 447 PIADHSEYLPPTQSQKPNMLLASIP 373
           P+A ++E  PP   Q P +LL ++P
Sbjct: 433 PLASNAENKPPVAQQSPPVLLPTLP 457


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 25/66 (37%), Positives = 30/66 (45%)
 Frame = -3

Query: 498 SRSFSKFSCPMYSEMDRPIADHSEYLPPTQSQKPNMLLASIPNAVTFSAFVDKATKCLAT 319
           S +FS    P  S     I DHS   PP+   K   L A  PN+ TF+    K  + LAT
Sbjct: 232 SSTFSPLRTPTSSSKTFVIVDHSTPSPPSIRTK---LEAFAPNS-TFA--TQKRLRRLAT 285

Query: 318 AEGSLA 301
            E S A
Sbjct: 286 LESSPA 291


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +2

Query: 167  DGTHLAEVLKKLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALS 346
            D   LAE+LKK+ P+  L +I       ++ + N       FL    D  + +R   ++ 
Sbjct: 1228 DEIELAEILKKIFPKLTLVLIDDPWSILKKLLQN-EQFNVVFLHFGNDKVSSSRLMYSVR 1286

Query: 347  TNA 355
            T+A
Sbjct: 1287 TSA 1289


>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -2

Query: 502 SVQKFLEVFVSDVQRDGQTDRGPQRISAPDPVPEAEHVVSVDTERGDLLGVRR 344
           S  K   VFV+D++         + +  PD     E + ++  E G L GV++
Sbjct: 175 SRDKLNSVFVNDIKAGYVAPLACETLELPDSESLKERITAISLENGLLGGVQK 227


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 209  ETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVA 325
            ET+   I S       T T++SSA +W   S  DPS  A
Sbjct: 931  ETSSSAITSSV-AASVTPTSSSSASSWSSSSEVDPSTAA 968


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 227 IASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEKVTAFGIDANNM 394
           I SKT  T  ++ +  +   +  E  KD +  AR F+A    +E++ +     +NM
Sbjct: 80  IGSKTTETPASVQDICNVVVYLKERFKDTNFEARGFIAHDLYSEEMYSSRNRLSNM 135


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = +2

Query: 179 LAEVLKKLNPETA 217
           LAEV KK NPETA
Sbjct: 131 LAEVAKKWNPETA 143


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 101 LMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLN 205
           + V+  L P+A+H K  +      +HL EV K  N
Sbjct: 311 MRVSSDLFPFASHAKYGYTLEFAQSHLEEVGKLAN 345


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
 Frame = -3

Query: 438 DH-SEYLPPTQSQKPNMLLASIPNAVTFSAFVDKATKCLATAEGSL--ADSRNHVLAELA 268
           DH S Y      +K N+  +  P  +TF    + + K  ATAE +             LA
Sbjct: 138 DHLSVYQDEKVVEKENLFTSPAPERLTFQLLSNTSEKKTATAEENAFKVGLIEAAAQNLA 197

Query: 267 FVIVSCVVNVLDAMMNSAVSGFSFFKTSARWVPSMLDTKW 148
             ++ C  N + ++     +    F+ S++    + D KW
Sbjct: 198 RSLMECPANYMTSLQFCHFAQ-ELFQNSSKVKVFVHDEKW 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,283
Number of Sequences: 5004
Number of extensions: 37339
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)