Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303C02f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110500-9|CAE54920.1| 586|Caenorhabditis elegans Hypothetical ... 270 3e-73
AL110500-8|CAB60430.1| 551|Caenorhabditis elegans Hypothetical ... 270 3e-73
Z81095-1|CAB03158.1| 667|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical... 27 6.2
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 27 6.2
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 27 6.2
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 27 6.2
AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensor... 27 6.2
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 27 6.2
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 27 6.2
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 27 6.2
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 27 6.2
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 27 6.2
AF024503-5|AAG24096.1| 330|Caenorhabditis elegans Serpentine re... 27 6.2
AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ... 27 6.2
>AL110500-9|CAE54920.1| 586|Caenorhabditis elegans Hypothetical
protein Y87G2A.8b protein.
Length = 586
Score = 270 bits (663), Expect = 3e-73
Identities = 125/173 (72%), Positives = 142/173 (82%)
Frame = +2
Query: 2 FSDQVVSGQWKGYTGKAITDVINIGIGGSDLGPLMVTEALKPYANHLKVHFVSNIDGTHL 181
F ++++SG W GYTGK ITDV+NIGIGGSDLGPLMVTE+LK Y VHFVSN+DGTH+
Sbjct: 166 FCNEIISGSWTGYTGKKITDVVNIGIGGSDLGPLMVTESLKNYQIGPNVHFVSNVDGTHV 225
Query: 182 AEVLKKLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEK 361
AEV KKLN ET LFIIASKTFTTQETITNA +AK WFL A D AVA+HFVALSTN K
Sbjct: 226 AEVTKKLNAETTLFIIASKTFTTQETITNAETAKEWFLAKAGDAGAVAKHFVALSTNVTK 285
Query: 362 VTAFGIDANNMFGFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANFMDQ 520
FGID NMF FWDWVGGRYSLWSAIGLSI+++IG +N+EKLLDGA +D+
Sbjct: 286 AVEFGIDEKNMFEFWDWVGGRYSLWSAIGLSIAVHIGFDNYEKLLDGAFSVDE 338
>AL110500-8|CAB60430.1| 551|Caenorhabditis elegans Hypothetical
protein Y87G2A.8a protein.
Length = 551
Score = 270 bits (663), Expect = 3e-73
Identities = 125/173 (72%), Positives = 142/173 (82%)
Frame = +2
Query: 2 FSDQVVSGQWKGYTGKAITDVINIGIGGSDLGPLMVTEALKPYANHLKVHFVSNIDGTHL 181
F ++++SG W GYTGK ITDV+NIGIGGSDLGPLMVTE+LK Y VHFVSN+DGTH+
Sbjct: 131 FCNEIISGSWTGYTGKKITDVVNIGIGGSDLGPLMVTESLKNYQIGPNVHFVSNVDGTHV 190
Query: 182 AEVLKKLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVALSTNAEK 361
AEV KKLN ET LFIIASKTFTTQETITNA +AK WFL A D AVA+HFVALSTN K
Sbjct: 191 AEVTKKLNAETTLFIIASKTFTTQETITNAETAKEWFLAKAGDAGAVAKHFVALSTNVTK 250
Query: 362 VTAFGIDANNMFGFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANFMDQ 520
FGID NMF FWDWVGGRYSLWSAIGLSI+++IG +N+EKLLDGA +D+
Sbjct: 251 AVEFGIDEKNMFEFWDWVGGRYSLWSAIGLSIAVHIGFDNYEKLLDGAFSVDE 303
>Z81095-1|CAB03158.1| 667|Caenorhabditis elegans Hypothetical
protein F59F4.1 protein.
Length = 667
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 71 IGIGGSDLGPLMVTEALKPYANHLKVHFVSNIDGTHLAEVLKKLNPETALFI 226
+GI G+D G L+ + P L + N DGT++A KL T +F+
Sbjct: 240 LGINGNDNGFLLFDKVRIPRKALLMRYAKVNPDGTYIAPAHSKLGYGTMVFV 291
>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
protein Y51A2D.15 protein.
Length = 1222
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 498 SRSFSKFSCPMYSEMDRPIADHSEYLPPTQSQKPNMLLASIPN 370
SRSFSK S P + S +L ++ KP++L + N
Sbjct: 1165 SRSFSKISALKIQSSPSPSSSFSRFLSLRRTAKPSLLQGAYTN 1207
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 179 LAEVLKKLNPETALFIIASKTFTTQETITNASSAK 283
+ E LKK++PET + T TT T T K
Sbjct: 276 IGEALKKMDPETTTTTSTTTTTTTAPTTTKMEEPK 310
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 179 LAEVLKKLNPETALFIIASKTFTTQETITNASSAK 283
+ E LKK++PET + T TT T T K
Sbjct: 490 IGEALKKMDPETTTTTSTTTTTTTAPTTTKMEEPK 524
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 179 LAEVLKKLNPETALFIIASKTFTTQETITNASSAK 283
+ E LKK++PET + T TT T T K
Sbjct: 626 IGEALKKMDPETTTTTSTTTTTTTAPTTTKMEEPK 660
>AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform i protein.
Length = 954
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 179 LAEVLKKLNPETALFIIASKTFTTQETITNASSAK 283
+ E LKK++PET + T TT T T K
Sbjct: 675 IGEALKKMDPETTTTTSTTTTTTTAPTTTKMEEPK 709
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 179 LAEVLKKLNPETALFIIASKTFTTQETITNASSAK 283
+ E LKK++PET + T TT T T K
Sbjct: 675 IGEALKKMDPETTTTTSTTTTTTTAPTTTKMEEPK 709
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 179 LAEVLKKLNPETALFIIASKTFTTQETITNASSAK 283
+ E LKK++PET + T TT T T K
Sbjct: 675 IGEALKKMDPETTTTTSTTTTTTTAPTTTKMEEPK 709
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 179 LAEVLKKLNPETALFIIASKTFTTQETITNASSAK 283
+ E LKK++PET + T TT T T K
Sbjct: 667 IGEALKKMDPETTTTTSTTTTTTTAPTTTKMEEPK 701
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 179 LAEVLKKLNPETALFIIASKTFTTQETITNASSAK 283
+ E LKK++PET + T TT T T K
Sbjct: 679 IGEALKKMDPETTTTTSTTTTTTTAPTTTKMEEPK 713
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 179 LAEVLKKLNPETALFIIASKTFTTQETITNASSAK 283
+ E LKK++PET + T TT T T K
Sbjct: 679 IGEALKKMDPETTTTTSTTTTTTTAPTTTKMEEPK 713
>AF024503-5|AAG24096.1| 330|Caenorhabditis elegans Serpentine
receptor, class h protein246 protein.
Length = 330
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 173 THLAEVLKKLNPETALFIIASKTFTTQETITNASSAKTWF 292
T LK L E +F I+ KTF TQ+T A + + F
Sbjct: 208 TFFVLTLKNLFKENKVFNISRKTFETQQTFFKAITIQFMF 247
>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
protein K02F6.4 protein.
Length = 1193
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 53 ITDVINIGIGGSDLGPLMVTEALKPYANHLKV 148
+TD I G D+ ++T +LKP + HL +
Sbjct: 133 LTDAIGKVTGSFDISTSLITTSLKPVSEHLNL 164
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,364,558
Number of Sequences: 27780
Number of extensions: 213173
Number of successful extensions: 820
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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