Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosoli...   172   1e-43
At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative...    84   5e-17
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila...    31   0.36 
At2g05755.1 68415.m00619 integral membrane family protein contai...    30   0.82 
At5g40440.1 68418.m04904 mitogen-activated protein kinase kinase...    29   1.9  
At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger) fa...    29   1.9  
At5g11000.1 68418.m01281 expressed protein                             28   3.3  
At2g32080.2 68415.m03921 PUR alpha-1 protein identical to PUR al...    28   3.3  
At2g32080.1 68415.m03920 PUR alpha-1 protein identical to PUR al...    28   3.3  
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ...    28   4.4  
At3g09130.1 68416.m01074 hypothetical protein                          28   4.4  
At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR...    28   4.4  
At5g14330.1 68418.m01675 expressed protein                             27   5.8  
At3g43500.1 68416.m04612 hypothetical protein                          27   5.8  

>At5g42740.1 68418.m05205 glucose-6-phosphate isomerase, cytosolic
           (PGIC) identical to SP|P34795 Glucose-6-phosphate
           isomerase, cytosolic (EC 5.3.1.9) (GPI) (Phosphoglucose
           isomerase) (PGI) (Phosphohexose isomerase) (PHI)
           {Arabidopsis thaliana}; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 560

 Score =  172 bits (418), Expect = 1e-43
 Identities = 92/180 (51%), Positives = 116/180 (64%), Gaps = 7/180 (3%)
 Frame = +2

Query: 2   FSDQVVSGQWKGYTGKAITDVINIGIGGSDLGPLMVTEALKPYANHLK------VHFVSN 163
           FSD++ SG W G TGK + DVI IGIGGS LGPL V  AL+     L+      + F++N
Sbjct: 130 FSDKIRSGSWVGATGKPLKDVIAIGIGGSFLGPLFVHTALQTDPEALESAKGRQLRFLAN 189

Query: 164 IDGTHLAEVLKKLNPETALFIIASKTFTTQETITNASSAKTWFLESAKDPSAVARHFVAL 343
           ID   +A  +  LNPET L ++ SKTFTT ET+ NA + + W + +A   SAVA+H VA+
Sbjct: 190 IDPVDVARNISGLNPETTLVVVVSKTFTTAETMLNARTLREW-ITAALGASAVAKHMVAV 248

Query: 344 STNAEKVTAFGIDANNMFGFWDWVGGRYSLWSAIG-LSISLYIGHENFEKLLDGANFMDQ 520
           STN   V  FGID NN F FWDWVGGRYS+ SA+G L +SL  G    EK L GA+ +DQ
Sbjct: 249 STNLALVEKFGIDPNNAFAFWDWVGGRYSVCSAVGVLPLSLQYGFSMVEKFLKGASSIDQ 308


>At4g24620.1 68417.m03526 glucose-6-phosphate isomerase, putative
           similar to glucose-6-phosphate isomerase [Spinacia
           oleracea] GI:3413511; contains Pfam profile PF00342:
           glucose-6-phosphate isomerase
          Length = 613

 Score = 84.2 bits (199), Expect = 5e-17
 Identities = 61/181 (33%), Positives = 92/181 (50%), Gaps = 8/181 (4%)
 Frame = +2

Query: 2   FSDQVVSGQWKGYTGKA--ITDVINIGIGGSDLGPLMVTEALKPYANHLKVHFVSNIDGT 175
           FSD ++SG+ K  +      T ++++GIGGS LGP  V EAL P    LK+ F+ N D  
Sbjct: 165 FSDDIISGKIKPPSSPEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPA 224

Query: 176 HLAEVLKKLNPETA--LFIIASKTFTTQETITNASSAKTWFLES----AKDPSAVARHFV 337
            +   + +L PE A  L ++ SK+  T ET       +  F E+    AK   A+ +   
Sbjct: 225 GIDHQIAQLGPELASTLVVVISKSGGTPETRNGLLEVQKAFREAGLNFAKQGVAITQE-N 283

Query: 338 ALSTNAEKVTAFGIDANNMFGFWDWVGGRYSLWSAIGLSISLYIGHENFEKLLDGANFMD 517
           +L  N  ++  +       F  +DWVGGR S+ SA+GL  +   G  N  ++L GA  MD
Sbjct: 284 SLLDNTARIEGW----LARFPMYDWVGGRTSIMSAVGLLPAALQG-INVREMLTGAALMD 338

Query: 518 Q 520
           +
Sbjct: 339 E 339


>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 841

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 472 SDVQRDGQTDRGPQRISAPDPVPEAEHVVSVDTERG 365
           SD   + + D G +R    DP+PEA+ V   + +RG
Sbjct: 516 SDFMENNEVDDGVERFQTLDPIPEAKTVKKSERKRG 551


>At2g05755.1 68415.m00619 integral membrane family protein contains
           Pfam PF00892: Integral membrane protein domain
          Length = 401

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 359 KVTAFGIDANNMFGFWDWVGGRYSLWSAIGLSISLYI 469
           KVT   I     F  W W G RYS    + LS +LY+
Sbjct: 73  KVTETEISPVTQFSSWIWSGSRYSGLLCMALSSTLYL 109


>At5g40440.1 68418.m04904 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK3) similar to NPK2 [Nicotiana
           tabacum] gi|862342|dbj|BAA06731; mitogen-activated
           protein kinase kinase (MAPKK) family, PMID:12119167
          Length = 520

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 110 TEALKPYANHLKVHFVSNIDG-THLAEVLKKLNPETALFIIASKTFTTQETITNASS 277
           T+ LK  A+ L +H+ S  DG   L    K L  ET++F  + K  T    I +A S
Sbjct: 360 TQRLKDLADMLTIHYYSLFDGFDDLWHHAKSLYTETSVFSFSGKHNTGSTEIFSALS 416


>At1g74370.1 68414.m08616 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 261

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -3

Query: 288 HVLAELAFVIVSCVVNVLDAMMNSAVSGFSFFKTSARWVPSML 160
           H+LA+   V++  ++ +    +++AV G  FF T A  VPS L
Sbjct: 201 HLLAKFPLVVIFLLMALYAIPVSAAVLGVYFFVTFALAVPSFL 243


>At5g11000.1 68418.m01281 expressed protein
          Length = 389

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 450 RPIADHSEYLPPTQSQKPNMLLASIPNAVT 361
           RP ADH+   P   SQ P+ L +  PN  T
Sbjct: 7   RPTADHNHPPPQPPSQSPSPLSSGDPNLTT 36


>At2g32080.2 68415.m03921 PUR alpha-1 protein identical to PUR
           alpha-1 GI:5081612 from [Arabidopsis thaliana]; contains
           Pfam profile: PF04845 PurA ssDNA and RNA-binding protein
          Length = 295

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 197 KLNPETALFIIASKTFTTQETITNASSAKTWFLE 298
           K NP      I+ KT  T+ TI   SS  +WFL+
Sbjct: 48  KENPRGRYLKISEKTSATRSTIIVPSSGISWFLD 81


>At2g32080.1 68415.m03920 PUR alpha-1 protein identical to PUR
           alpha-1 GI:5081612 from [Arabidopsis thaliana]; contains
           Pfam profile: PF04845 PurA ssDNA and RNA-binding protein
          Length = 296

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 197 KLNPETALFIIASKTFTTQETITNASSAKTWFLE 298
           K NP      I+ KT  T+ TI   SS  +WFL+
Sbjct: 48  KENPRGRYLKISEKTSATRSTIIVPSSGISWFLD 81


>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 675

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 462 SEMDRPIADHSEYLPPTQSQKPNMLLASIPNAVTFSAFVDKATKCLATAEGSLADSRN 289
           S   +P  D+S+     QSQ+ + L    P  ++F +F  +  K L       A S+N
Sbjct: 545 SSASKPNTDNSDSQTLKQSQQGSFLPLGPPKGISFLSFASEEQKTLNREPQKPASSKN 602


>At3g09130.1 68416.m01074 hypothetical protein
          Length = 397

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 16  SKRAMEGVYRKGYNRCDQHWYW 81
           SKRA   V R+ ++RCDQ  +W
Sbjct: 183 SKRAFSAVERQFFSRCDQLSWW 204


>At2g35630.1 68415.m04369 microtubule organization 1 protein (MOR1)
           identical to microtubule organization 1 protein
           GI:14317953 from [Arabidopsis thaliana]
          Length = 1978

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 96  VPSWSQKH*SPMLIILRSISYLTSTAPTWPR 188
           VP W++K+      ++  I+Y++STA  +P+
Sbjct: 650 VPGWNEKNVQVQQQVIEIITYISSTAAKFPK 680


>At5g14330.1 68418.m01675 expressed protein 
          Length = 128

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = -3

Query: 516 SMKLAPSRSFSKFS--CPMYSEMDRPIADHS--EYLPPTQSQKPNMLLASIPNAVTFSAF 349
           ++++AP  S  +F+  C + + M      H+   +  P  +  P M  A  P+A TFSA+
Sbjct: 53  NIQMAPRSSLIRFAFICIVLAVMVMTAESHNGTHHHGPAMAPMPPMAKAPSPSAATFSAY 112

Query: 348 VDKATKCLATA 316
                  L  A
Sbjct: 113 PQLIATALVAA 123


>At3g43500.1 68416.m04612 hypothetical protein 
          Length = 153

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 472 SDVQRDGQTDRGPQRISAPDPVPEAEH 392
           +D+  DG TDR P R+ A +P  E  H
Sbjct: 8   ADIAADGLTDRPPDRL-ADEPAEELSH 33


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,990,812
Number of Sequences: 28952
Number of extensions: 207775
Number of successful extensions: 824
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)