Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C01f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    24   0.71 
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   5.0  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   5.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   6.6  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 24.2 bits (50), Expect = 0.71
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 209 NNKRKNNCKIIDHKLFMM 262
           N KRKNN K+   ++F+M
Sbjct: 343 NKKRKNNIKLYVRRVFIM 360


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 358 KMRGVPILYYTLVIISY 308
           ++ G PI+++ L +I+Y
Sbjct: 163 QVTGTPIIFHNLTLITY 179


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 358 KMRGVPILYYTLVIISY 308
           ++ G PI+++ L +I+Y
Sbjct: 163 QVTGTPIIFHNLTLITY 179


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 134 KSW--SYYSLKYTCDSCDLCIKSYP*YNNKRKNNCKIIDHKLF 256
           +SW  S   +  T +S   C  +YP Y+N    +   + H  F
Sbjct: 233 RSWCSSSQPVLSTTNSTTNCYNNYPYYSNMDYLSSSTMSHSQF 275


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,788
Number of Sequences: 336
Number of extensions: 2428
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)