Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   3.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   6.8  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   6.8  

>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 460 KQAISSFQIYIQERTYLL 407
           K+ +SSFQIY++ + YLL
Sbjct: 404 KKHLSSFQIYLKPKDYLL 421


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 492  FFVDQIHVQMISKRYLLFRFTSKRGHIFFNL*LHVHF 382
            +F  Q+H +   ++Y     T +R H+F +    +HF
Sbjct: 2853 YFNRQLHEEAAKEQYPPLNITVRRDHVFLDSYRALHF 2889


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/37 (24%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 519 VTIFTVVHEF-FVDQIHVQMISKRYLLFRFTSKRGHI 412
           ++++  +HEF  +  IH++   + YLL +   + G++
Sbjct: 500 LSVWRRIHEFDAISSIHIKSSKRDYLLIQTVGRDGYV 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,218
Number of Sequences: 5004
Number of extensions: 38008
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)