Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060...    31   0.56 
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69...    31   0.56 
01_07_0302 - 42611150-42611812,42611881-42611961,42612064-426121...    27   6.9  
04_03_0634 - 18211054-18212169,18213449-18214219                       27   9.1  

>11_06_0562 +
           25003246-25003746,25004975-25005214,25005576-25006097,
           25006184-25007248,25007350-25007656,25007761-25008001,
           25008104-25008302,25008771-25008852,25008959-25009209,
           25010061-25010219,25010220-25010603
          Length = 1316

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 131 LKSWSYYSLKYTCDSCDLCIKSYP*YNNKRKNNCKIIDHKLFMMKMQMA 277
           LK+WS ++L  T D+C   IKS   ++   K +CK+ D      K++++
Sbjct: 394 LKAWSVFNLDKTEDNCS-GIKSMLNFSEMAKTDCKMCDMSFDYEKIKLS 441


>03_01_0085 +
           690618-691012,691114-691193,691775-691959,692363-693320,
           693391-693518,693951-694010,694113-694163,694704-694821,
           694990-695915,695916-697707,697810-697943,698029-698526
          Length = 1774

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +2

Query: 80  SV*HRLYT*YVRVSKICLKSWSYYSLKYTCDSCDLCIKSYP*YNNKRKNNCKII 241
           +V +  YT    + K+C+K   ++S++ T   CD C  +     +K + + KI+
Sbjct: 169 AVHYMCYTCTYSLCKVCIKQGKFFSVRGTKGFCDTCYSTILLIESKDEGDTKIV 222


>01_07_0302 -
           42611150-42611812,42611881-42611961,42612064-42612150,
           42612283-42612378,42612479-42612543,42612919-42612975,
           42613066-42613147,42613235-42613327,42613714-42613785,
           42613881-42613985
          Length = 466

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 328 YNKV*VLPSSLVRNLKHHKMDVESKIKEDMSSLGCKSE 441
           +NK+  +PS L +N+K   +D+ + + E  S L   SE
Sbjct: 186 HNKITTIPSDLAKNVKILNLDLGNNLIERRSDLEVLSE 223


>04_03_0634 - 18211054-18212169,18213449-18214219
          Length = 628

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = +2

Query: 383 KWTWSQRLKKICPLLDVNLKRRYR----LLIICTCI*STKNSCTTVNIV 517
           KW WS+  +++CP+ D  L         L+++CT +  T+N  T V  +
Sbjct: 266 KW-WSEN-RRLCPVTDEILDNSIFIPNILIMLCTALWRTRNGITDVTTI 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,093,582
Number of Sequences: 37544
Number of extensions: 191217
Number of successful extensions: 345
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)