Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           29   3.1  
SB_17442| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 367 NLKHHKMDVESKIKEDMSSLGCKSEKKISLAYHLYMYLIDEKL-MYDCEYC 516
           N   H  +V S+++    +  C S  + +L    Y Y + +K+ +Y C +C
Sbjct: 203 NDSQHPQEVLSQVQSVQDASACASYSEQNLHTFTYKYRVPDKVKLYGCSHC 253


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 113 RVSKICLKSWSYYSLKYTCDSCDLC--IKSYP*YN 211
           R S +C KS        +CD  DLC  I++YP Y+
Sbjct: 373 RPSDLCAKSHEVCQYLESCDDADLCQYIQAYPKYS 407


>SB_17442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 389 TWSQRLKKICPLLDVNLKRRYRLLIICTCI*STKNSC 499
           TWSQ +  +   +D ++ + YR  ++ T I  T+N C
Sbjct: 303 TWSQSVPCLVASVDFDVGKSYRKKVLLTNISYTQNFC 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,927,645
Number of Sequences: 59808
Number of extensions: 263160
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)