Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical
           protein R06C7.9 protein.
          Length = 729

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +1

Query: 355 SLVRNLKHHKMDVESKIKEDMSSLGCKSEKKISLAYHLYMYLIDEKLMYDCEYC 516
           S +R L  H+   E  +K+ M    C   K+ S   H+Y++L  E  +Y C+ C
Sbjct: 186 STIRCLLDHRHQ-EHSLKDMMMCGLCG--KEFSKRTHIYLHLSQEYKVYHCDGC 236


>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical
           protein F37A4.4 protein.
          Length = 1163

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 487 RRSNTCTNDKQAISSFQIYIQERT 416
           ++   C  +K  +SSF IYI++RT
Sbjct: 925 KKFKLCVPEKFPVSSFHIYIEDRT 948


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,552,989
Number of Sequences: 27780
Number of extensions: 204899
Number of successful extensions: 525
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)