Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C01f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   5.8  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   7.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +1

Query: 394 ESKIKEDMSSLGCKSEKKISLAYHLYMYLIDEKLMYDCEYC 516
           ++K+K+     G   ++K       Y++    KL+ D EYC
Sbjct: 434 KNKLKKPRQGDGAAVKRKSREGSTTYLWEFLLKLLQDREYC 474


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 206 YNNKRKNNCK 235
           YNN   NNCK
Sbjct: 343 YNNNYNNNCK 352


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 355 MRGVPILYYTLVIISY 308
           M+ + IL +TL I+SY
Sbjct: 1   MKTIVILLFTLCIVSY 16


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 484  DEKLMYDCEYCY 519
            D + +YDC  CY
Sbjct: 1061 DRERLYDCYVCY 1072


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,342
Number of Sequences: 438
Number of extensions: 2572
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)