Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B12f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    23   1.2  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   2.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   2.9  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 127 LTAFKSTKVVKISFNYN 77
           +TA+++ K+ K+  NYN
Sbjct: 178 VTAYQNEKITKLKINYN 194


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = -2

Query: 445 ICENTPRD*VLTFETSSLCSFGMLCSPGSFKHST 344
           +CEN P D      T   C   + C+    K  T
Sbjct: 33  LCENRPADEYFRLTTEGDCRDVVRCTKSGLKQIT 66


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 518  LSTASLSSRAFFPSAFFLSW 459
            L T   S+R FFPS   + W
Sbjct: 1106 LITFGCSNRCFFPSKIRICW 1125


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,325
Number of Sequences: 336
Number of extensions: 2381
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)