Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    44   1e-05
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.7  

>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 44.0 bits (99), Expect = 1e-05
 Identities = 29/92 (31%), Positives = 43/92 (46%)
 Frame = +3

Query: 162 YSTTMTELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSE 341
           Y     +LDL   G  VWLVK+PK++ +KW   P + +   L   RV     ++QL L  
Sbjct: 16  YEDDAGDLDLGQIGSRVWLVKIPKFLMDKWNSIPED-DAANLGCVRVKND--EIQLLLQN 72

Query: 342 AVLCLKDPGEQSIPKEHKLDVSNVNTQSLGVF 437
           +      P    +PK + L V N   ++  VF
Sbjct: 73  S------PENADVPKIYNLRVMNKFVRNSYVF 98


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 24/80 (30%), Positives = 38/80 (47%)
 Frame = +3

Query: 222 KVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLKDPGEQSIPKEHKLD 401
           K+P Y  N   K    +E GK K+  +     ++   L +    LK+  E+ +  EH+ +
Sbjct: 182 KIPLY-PNGQPKYRKILENGK-KVKYLLDENGEILKRLVKKEKKLKNDNER-LENEHRTE 238

Query: 402 VSNVNTQSLGVFSHIAH*LP 461
             NVN  SLG  S + H +P
Sbjct: 239 KLNVNANSLGK-SFVKHDIP 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,975
Number of Sequences: 5004
Number of extensions: 41442
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)