Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0706 + 5811722-5814025                                           29   3.0  
05_06_0030 - 25060711-25060830,25060981-25061130,25061473-250615...    29   3.0  
01_06_0869 - 32591669-32591794,32591923-32592075,32592293-325923...    28   4.0  
05_04_0073 + 17669311-17671635                                         28   5.2  
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991...    27   6.9  

>11_01_0706 + 5811722-5814025
          Length = 767

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/54 (31%), Positives = 19/54 (35%)
 Frame = -2

Query: 496 HEPFSLQPSSFLGSQWAICENTPRD*VLTFETSSLCSFGMLCSPGSFKHSTASD 335
           H PF     SF   QW    +      L  +  SLCS   L   GS  H    D
Sbjct: 212 HGPFPTALGSFTALQWLGFSDNGNAATLLADMRSLCSMKSLGLGGSLSHGNIED 265


>05_06_0030 -
           25060711-25060830,25060981-25061130,25061473-25061544,
           25061631-25061761,25062487-25062635,25062998-25063239
          Length = 287

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +3

Query: 183 LDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLKD 362
           L+ +   R VWL+K P  +++ W+ A  + +      + V    AKV LSL   +L  ++
Sbjct: 8   LETARAERSVWLMKCPPVVSHAWQGAVSSSDAAGSNPNPVV---AKVVLSLD--LLRSEE 62

Query: 363 PGEQ-SIPK 386
           P  Q S+P+
Sbjct: 63  PSLQASLPR 71


>01_06_0869 -
           32591669-32591794,32591923-32592075,32592293-32592367,
           32592467-32592597,32593788-32593896,32594745-32594936
          Length = 261

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 183 LDLSNTGRGVWLVKVPKYIANKWEKA 260
           L+ +   R VWL+K P  ++  W++A
Sbjct: 8   LETARADRSVWLMKCPTVVSRAWQEA 33


>05_04_0073 + 17669311-17671635
          Length = 774

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -3

Query: 258 LFPICLLYI*VLLPTILLYQYLI 190
           LF I +LY  ++LPTI LY +LI
Sbjct: 607 LFVILVLYPELILPTIFLYLFLI 629


>04_04_0447 -
           25297351-25297575,25297663-25298370,25298824-25299123,
           25299876-25299927,25300530-25300673,25301002-25301258,
           25301533-25301739,25301819-25301992,25302409-25302432,
           25302610-25302677,25304607-25304665,25304802-25304877,
           25304965-25305070,25305268-25305377,25305831-25305995,
           25306571-25306656,25306893-25306957,25307280-25307330,
           25309009-25309056,25309677-25309796,25310226-25310301,
           25310780-25310877,25312149-25312404,25313117-25313238
          Length = 1198

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +3

Query: 90  EIFTTLVLLKAVKIVSAIDC**ILYSTTMTELDLSNTGRGVWLVKVPKYIANKWEKAPGN 269
           E  +T V+   + I+S +        ++  E+  +     VW  K  ++  N W   PG 
Sbjct: 632 EALSTAVIEDFLPIISRVKSVMSSNGSSKGEISYAKEHESVWF-KGRRFTPNVWANTPGE 690

Query: 270 IEVGKLK 290
           +++ +LK
Sbjct: 691 LQIKQLK 697


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,349,867
Number of Sequences: 37544
Number of extensions: 231005
Number of successful extensions: 458
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)