Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_24516| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)                     27   9.4  

>SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 201 GRGVWLVKVPKYIANKWEKAPGNIEVGKLKISR 299
           GR  W   V  Y+  K +  PGN+  GK  ISR
Sbjct: 482 GRDFWDNAVDSYVQLKLDPDPGNVYKGKTSISR 514


>SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 868

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +3

Query: 204 RGVWLVKVPKYIANKWEKAPG----NIEVGKLKISRVPGTRAKVQLS 332
           RGVW + VP    +   K       NI+ G   I R+PG+R ++ +S
Sbjct: 631 RGVWTLIVPNSAGSHSFKVSASSNVNIDFGNYLIRRLPGSRVEIPIS 677


>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1511

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 159  LYSTTMTELDLSNTGRGVWLVKVPKY--IANKWEKAP 263
            +YS  +   D +N    VWL K+PK+  + N+ +++P
Sbjct: 995  MYSAYVGNFDKANETVSVWLKKLPKFASVINEIQRSP 1031


>SB_24516| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 451 IDYQERKKAEGKKARDDKEAV 513
           I+Y+++KK EGK+AR  +E V
Sbjct: 65  IEYKKKKKDEGKRARATEEDV 85


>SB_4771| Best HMM Match : DEAD (HMM E-Value=0.015)
          Length = 592

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 258 APGNIEVGKLKISRVPGTRAKVQLSLSEAV-LCLKDPGEQSIPK 386
           APG ++V KLK   +P     +   L + +  CL+  G Q +P+
Sbjct: 175 APGQLQVKKLKTDDIPPYDVGISPELEQQLGNCLQSLGIQPVPQ 218


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,721,189
Number of Sequences: 59808
Number of extensions: 282976
Number of successful extensions: 533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)