Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303B12f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59745-1|CAA42419.1| 249|Homo sapiens RAP30 protein. 72 1e-12
X16901-1|CAA34775.1| 249|Homo sapiens 30kb subunit of RAB30 /74... 72 1e-12
BT019525-1|AAV38332.1| 249|Homo sapiens general transcription f... 72 1e-12
BC001771-1|AAH01771.1| 249|Homo sapiens general transcription f... 72 1e-12
AL138963-1|CAH72032.1| 249|Homo sapiens general transcription f... 72 1e-12
AL138693-1|CAH72459.1| 249|Homo sapiens general transcription f... 72 1e-12
AB020699-1|BAA74915.1| 621|Homo sapiens KIAA0892 protein protein. 31 3.2
>X59745-1|CAA42419.1| 249|Homo sapiens RAP30 protein.
Length = 249
Score = 72.1 bits (169), Expect = 1e-12
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Frame = +3
Query: 180 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 353
ELDL+ + GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 354 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFS 440
+ D P S P+EH + +V Q+L VF+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVFT 97
Score = 31.5 bits (68), Expect = 1.9
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +1
Query: 451 IDYQERKKAEGKKARDDKEAVLN 519
I+Y+ +KK +GK+AR DK+ VL+
Sbjct: 163 IEYERKKKEDGKRARADKQHVLD 185
>X16901-1|CAA34775.1| 249|Homo sapiens 30kb subunit of RAB30 /74
protein.
Length = 249
Score = 72.1 bits (169), Expect = 1e-12
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Frame = +3
Query: 180 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 353
ELDL+ + GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 354 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFS 440
+ D P S P+EH + +V Q+L VF+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVFT 97
Score = 31.5 bits (68), Expect = 1.9
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +1
Query: 451 IDYQERKKAEGKKARDDKEAVLN 519
I+Y+ +KK +GK+AR DK+ VL+
Sbjct: 163 IEYERKKKEDGKRARADKQHVLD 185
>BT019525-1|AAV38332.1| 249|Homo sapiens general transcription
factor IIF, polypeptide 2, 30kDa protein.
Length = 249
Score = 72.1 bits (169), Expect = 1e-12
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Frame = +3
Query: 180 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 353
ELDL+ + GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 354 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFS 440
+ D P S P+EH + +V Q+L VF+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVFT 97
Score = 31.5 bits (68), Expect = 1.9
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +1
Query: 451 IDYQERKKAEGKKARDDKEAVLN 519
I+Y+ +KK +GK+AR DK+ VL+
Sbjct: 163 IEYERKKKEDGKRARADKQHVLD 185
>BC001771-1|AAH01771.1| 249|Homo sapiens general transcription
factor IIF, polypeptide 2, 30kDa protein.
Length = 249
Score = 72.1 bits (169), Expect = 1e-12
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Frame = +3
Query: 180 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 353
ELDL+ + GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 354 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFS 440
+ D P S P+EH + +V Q+L VF+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVFT 97
Score = 31.5 bits (68), Expect = 1.9
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +1
Query: 451 IDYQERKKAEGKKARDDKEAVLN 519
I+Y+ +KK +GK+AR DK+ VL+
Sbjct: 163 IEYERKKKEDGKRARADKQHVLD 185
>AL138963-1|CAH72032.1| 249|Homo sapiens general transcription
factor IIF, polypeptide 2, 30kDa protein.
Length = 249
Score = 72.1 bits (169), Expect = 1e-12
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Frame = +3
Query: 180 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 353
ELDL+ + GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 354 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFS 440
+ D P S P+EH + +V Q+L VF+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVFT 97
Score = 31.5 bits (68), Expect = 1.9
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +1
Query: 451 IDYQERKKAEGKKARDDKEAVLN 519
I+Y+ +KK +GK+AR DK+ VL+
Sbjct: 163 IEYERKKKEDGKRARADKQHVLD 185
>AL138693-1|CAH72459.1| 249|Homo sapiens general transcription
factor IIF, polypeptide 2, 30kDa protein.
Length = 249
Score = 72.1 bits (169), Expect = 1e-12
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 6/93 (6%)
Frame = +3
Query: 180 ELDLSNTGR--GVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLC 353
ELDL+ + GVWLVKVPKY++ +W KA G EVGKL+I++ G R +V +L+E +
Sbjct: 6 ELDLTGAKQNTGVWLVKVPKYLSQQWAKASGRGEVGKLRIAKTQG-RTEVSFTLNEDLAN 64
Query: 354 LKD----PGEQSIPKEHKLDVSNVNTQSLGVFS 440
+ D P S P+EH + +V Q+L VF+
Sbjct: 65 IHDIGGKPASVSAPREHPFVLQSVGGQTLTVFT 97
Score = 31.5 bits (68), Expect = 1.9
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +1
Query: 451 IDYQERKKAEGKKARDDKEAVLN 519
I+Y+ +KK +GK+AR DK+ VL+
Sbjct: 163 IEYERKKKEDGKRARADKQHVLD 185
>AB020699-1|BAA74915.1| 621|Homo sapiens KIAA0892 protein protein.
Length = 621
Score = 30.7 bits (66), Expect = 3.2
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 508 LLYHHEPFSLQPSSFLGSQWAICENTPRD*VLTFETSSLCS 386
+LYHH S Q S L W I + P+ + FE +SL S
Sbjct: 82 VLYHHTKNSEQARSHLEKAWLISQQIPQFEDVKFEAASLLS 122
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,282,495
Number of Sequences: 237096
Number of extensions: 1429834
Number of successful extensions: 5913
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5913
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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