Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B12f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U25188-1|AAA86888.1|  277|Drosophila melanogaster initiation fac...   127   8e-30
AY071514-1|AAL49136.1|  277|Drosophila melanogaster RE56801p pro...   127   8e-30
AE014297-1190|AAF54548.1|  277|Drosophila melanogaster CG6538-PA...   127   8e-30
U02461-1|AAA81888.1|  276|Drosophila melanogaster dTFIIF30 protein.   116   1e-26

>U25188-1|AAA86888.1|  277|Drosophila melanogaster initiation factor
           TFIIF smallsubunit protein.
          Length = 277

 Score =  127 bits (307), Expect = 8e-30
 Identities = 62/90 (68%), Positives = 74/90 (82%)
 Frame = +3

Query: 180 ELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK 359
           +LDLSN GRGVWLVKVPKYIA KWEKAP N++VGKL+I++ PG +A+V LSL+ AVL L 
Sbjct: 15  DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLAL- 73

Query: 360 DPGEQSIPKEHKLDVSNVNTQSLGVFSHIA 449
           DP E+ IP EH LDVS V  Q+LGVFSH+A
Sbjct: 74  DP-EEKIPTEHILDVSQVTKQTLGVFSHMA 102



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = +1

Query: 451 IDYQERKKAEGKKARDDKEAVLN 519
           I+Y+ERKKAEGKKARDDK AV++
Sbjct: 180 IEYRERKKAEGKKARDDKNAVMD 202


>AY071514-1|AAL49136.1|  277|Drosophila melanogaster RE56801p
           protein.
          Length = 277

 Score =  127 bits (307), Expect = 8e-30
 Identities = 62/90 (68%), Positives = 74/90 (82%)
 Frame = +3

Query: 180 ELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK 359
           +LDLSN GRGVWLVKVPKYIA KWEKAP N++VGKL+I++ PG +A+V LSL+ AVL L 
Sbjct: 15  DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLAL- 73

Query: 360 DPGEQSIPKEHKLDVSNVNTQSLGVFSHIA 449
           DP E+ IP EH LDVS V  Q+LGVFSH+A
Sbjct: 74  DP-EEKIPTEHILDVSQVTKQTLGVFSHMA 102



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = +1

Query: 451 IDYQERKKAEGKKARDDKEAVLN 519
           I+Y+ERKKAEGKKARDDK AV++
Sbjct: 180 IEYRERKKAEGKKARDDKNAVMD 202


>AE014297-1190|AAF54548.1|  277|Drosophila melanogaster CG6538-PA
           protein.
          Length = 277

 Score =  127 bits (307), Expect = 8e-30
 Identities = 62/90 (68%), Positives = 74/90 (82%)
 Frame = +3

Query: 180 ELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK 359
           +LDLSN GRGVWLVKVPKYIA KWEKAP N++VGKL+I++ PG +A+V LSL+ AVL L 
Sbjct: 15  DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLAL- 73

Query: 360 DPGEQSIPKEHKLDVSNVNTQSLGVFSHIA 449
           DP E+ IP EH LDVS V  Q+LGVFSH+A
Sbjct: 74  DP-EEKIPTEHILDVSQVTKQTLGVFSHMA 102



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = +1

Query: 451 IDYQERKKAEGKKARDDKEAVLN 519
           I+Y+ERKKAEGKKARDDK AV++
Sbjct: 180 IEYRERKKAEGKKARDDKNAVMD 202


>U02461-1|AAA81888.1|  276|Drosophila melanogaster dTFIIF30 protein.
          Length = 276

 Score =  116 bits (280), Expect = 1e-26
 Identities = 57/84 (67%), Positives = 68/84 (80%)
 Frame = +3

Query: 180 ELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLK 359
           +LDLSN GRGVWLVKVPKYIA KWEKAP N++VGKL+I++ PG +A+V LSL+ AVL L 
Sbjct: 15  DLDLSNAGRGVWLVKVPKYIAQKWEKAPTNMDVGKLRINKTPGQKAQVSLSLTPAVLAL- 73

Query: 360 DPGEQSIPKEHKLDVSNVNTQSLG 431
           DP E+ IP EH LDVS V  Q+LG
Sbjct: 74  DP-EEKIPTEHILDVSQVTKQTLG 96



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = +1

Query: 451 IDYQERKKAEGKKARDDKEAVLN 519
           I+Y+ERKKAEGKKARDDK AV++
Sbjct: 179 IEYRERKKAEGKKARDDKNAVMD 201


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,906,000
Number of Sequences: 53049
Number of extensions: 396738
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)