Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-28|CAD31828.1|  263|Caenorhabditis elegans Hypothetical...    43   1e-04
Z92972-2|CAB07487.1|  336|Caenorhabditis elegans Hypothetical pr...    31   0.66 
AL021566-4|CAA16505.1|  336|Caenorhabditis elegans Hypothetical ...    31   0.66 
AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical...    29   2.7  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical p...    28   4.7  

>AL132948-28|CAD31828.1|  263|Caenorhabditis elegans Hypothetical
           protein Y39B6A.36 protein.
          Length = 263

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
 Frame = +3

Query: 180 ELDLSNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKI-SRVPGTRAKVQL------SLS 338
           ++D     R +WLVKVP+Y++  W+   GN+ VGKL+I ++V    AK  +         
Sbjct: 10  DVDCELAKRSIWLVKVPRYLSELWDANEGNV-VGKLQIGAQVELHTAKGLIHPKPKEPTE 68

Query: 339 EAVLCLKDPGEQSIPKEHKLDVSNVNTQSLGVFS 440
            +   +  P    IP E+   + +V +Q++ V S
Sbjct: 69  GSSSTVTQPEASEIPTEYSFILHDVKSQTMSVLS 102


>Z92972-2|CAB07487.1|  336|Caenorhabditis elegans Hypothetical
           protein T19C9.2 protein.
          Length = 336

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 319 LALVP-GTLEIFSFPTSMFPGAFSHLFAIY 233
           LA+ P  T E F FP  +F G  SH+F +Y
Sbjct: 183 LAIYPCPTREFFIFPVCVFEGTTSHIFLVY 212


>AL021566-4|CAA16505.1|  336|Caenorhabditis elegans Hypothetical
           protein F08E10.6 protein.
          Length = 336

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 319 LALVP-GTLEIFSFPTSMFPGAFSHLFAIY 233
           LA+ P  T E F FP  +F G  SH+F +Y
Sbjct: 183 LAIYPCPTREFFIFPVCVFEGTTSHIFLVY 212


>AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical
           protein Y9C9A.13 protein.
          Length = 688

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +3

Query: 162 YSTTMTELDL--SNTGRGVWLVKVPKYIANKWEKAPGNIEVGKLKISRVPGTRAKVQLSL 335
           Y+   T LDL  SN      L K    +   + K   N  + K+ +  V  T   ++L L
Sbjct: 23  YNDFETHLDLQSSNIIFASLLSKRSSEVVKFFPKISKNFFLTKVNLKNVRLTHPMIKL-L 81

Query: 336 SEAVLCLKDPGEQSIPKEHKLDVSNVN 416
           SE  L     G+Q+I K++K D++ V+
Sbjct: 82  SEHTLESLALGDQAIRKDYKNDIAQVD 108


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical
           protein T13H2.5a protein.
          Length = 2471

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +3

Query: 261 PGNIEVGKLKISRVPGTRAKVQLSLSEAVLCLKDPGEQSI---PKEHKLDVSNVNTQS 425
           PG+  + + K+ R PGT         EA LC+   G++ +   P+++++      T S
Sbjct: 665 PGDTGISRPKVQRAPGTNRLSMNVCPEAGLCVLKEGKKKLVIPPEDYEISSDETVTLS 722


>Z99281-35|CAB16518.2|  524|Caenorhabditis elegans Hypothetical
           protein Y57G11C.17 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 313 LVPGTLEIFSFPTSMFP--GAFSHLFAIYLGTFTNHTPL 203
           +V G L++FS   S+FP    F+ L  + LG F N+  L
Sbjct: 474 VVQGVLDVFSINISIFPLTAGFAFLHILTLGYFFNNVCL 512


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,287,423
Number of Sequences: 27780
Number of extensions: 225016
Number of successful extensions: 536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)