Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    97   2e-21
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    94   1e-20
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    92   4e-20
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.3  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.7  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    27   1.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.2  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   3.0  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   3.9  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   3.9  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.9  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   5.2  
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.0  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 96.7 bits (230), Expect = 2e-21
 Identities = 40/69 (57%), Positives = 60/69 (86%)
 Frame = +1

Query: 34  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 213
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 214 KLSSMPVGG 240
           KL+++P GG
Sbjct: 61  KLATVPTGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 40/69 (57%), Positives = 60/69 (86%)
 Frame = +1

Query: 34  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 213
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 214 KLSSMPVGG 240
           KLS++P  G
Sbjct: 61  KLSTVPSAG 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 92.3 bits (219), Expect = 4e-20
 Identities = 38/69 (55%), Positives = 60/69 (86%)
 Frame = +1

Query: 34  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 213
           M+Y+AAYLL  +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG E
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 214 KLSSMPVGG 240
           KL+++P GG
Sbjct: 61  KLATVPSGG 69


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -1

Query: 170 SSVITFLSFSPSASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 42
           SSV T LS S S+SIP  +     STS ++  V+P S++S  +++
Sbjct: 8   SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52



 Score = 25.0 bits (52), Expect = 6.8
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = -1

Query: 218 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYA 48
           SF+ PA+ S  TSL  SS     S S S +  +   + S+S+A+    P S++S +A
Sbjct: 70  SFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSAS----PTSSSSSHA 122


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -1

Query: 242 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSP----SASIPTELRIFSTSAAAGVVL 75
           PPP     SFS    I+ ++ +P SS  T  + SP    S+ +P+ + I S S ++  VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245

Query: 74  PPS 66
           P S
Sbjct: 246 PTS 248


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 185 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKY 51
           + L + S  T +S S   S+PT+  +  T + +  V PPS  S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 31   KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQ 192
            K+R +    +  L  ++T  +   E+   + G+E+ G+K K ++ E  NGK +++
Sbjct: 1323 KVRRIKPCTIESLFNESTLRSGKAERFSENAGVESIGKKGKNLLNESGNGKKLDK 1377


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 185 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT 42
           T LP ++V T  SFS SAS  T     +++    +V PPST+     T
Sbjct: 37  TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -1

Query: 200 AISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 57
           ++S S+ L  S++ T  S   +AS+PT   I S S        P+T+S
Sbjct: 79  SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +2

Query: 29  KKCVTWPRIYWLCWV 73
           +K  +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 29  KKCVTWPRIYWLCWVARPRQLPLTLRRSSAPSVSKLTVRSLRK*SLSST 175
           KK + + +I W  WV R   +P      S PS S      L   SLS++
Sbjct: 161 KKGIQFEKIGWGRWVLRDSTIPANSHPQSLPSNSIPKTEPLDTPSLSNS 209


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 218 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTA 60
           SF  P+A +   S P+SS+ +F + S +++ P+     + S  A    P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503


>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 368 TKLYKSTRRWSLFQFMF 418
           TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -1

Query: 236 PTGIDDSFSRPAAISCSTSLPLSS---VITFLSFSPSASIPTELRIFSTSAAAGVVLPPS 66
           PT    S+   +++  S+S P SS    +T  S S S+   T     STS++       S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261

Query: 65  TASKYAAT 42
           TAS  +++
Sbjct: 262 TASSSSSS 269


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = -1

Query: 239 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVV 78
           PPTG   S S P         + STS+P+    T  + + S+ +PT     STS      
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234

Query: 77  LPPSTAS 57
           +P   +S
Sbjct: 235 IPTGGSS 241



 Score = 24.6 bits (51), Expect = 9.0
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -1

Query: 206 PAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT 42
           P   + STS+P+    T  + + S+ +PT     STS      +PP+  S    T
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPTGNSTTPVT 302


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,443
Number of Sequences: 5004
Number of extensions: 26734
Number of successful extensions: 101
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)