Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303B09f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 215 3e-57
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 215 3e-57
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.42
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.56
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 28 0.97
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 3.9
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 6.8
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 6.8
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 6.8
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 6.8
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 25 9.0
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 9.0
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 215 bits (525), Expect = 3e-57
Identities = 97/172 (56%), Positives = 129/172 (75%)
Frame = +1
Query: 1 SSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRA 180
++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR
Sbjct: 2 ANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRF 61
Query: 181 RVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYH 360
R+RK A+R GRH G+GKR+GTA ARMP +W + KID+HLYH
Sbjct: 62 RIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYH 121
Query: 361 SLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEXRRNKVKEARKRR 516
+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q + RR + K AR+RR
Sbjct: 122 TLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQRR 173
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 215 bits (525), Expect = 3e-57
Identities = 97/172 (56%), Positives = 129/172 (75%)
Frame = +1
Query: 1 SSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRA 180
++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR
Sbjct: 2 ANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRF 61
Query: 181 RVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYH 360
R+RK A+R GRH G+GKR+GTA ARMP +W + KID+HLYH
Sbjct: 62 RIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYH 121
Query: 361 SLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEXRRNKVKEARKRR 516
+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q + RR + K AR+RR
Sbjct: 122 TLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQRR 173
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -3
Query: 141 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 52
+I +H++DV G+ V LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 120 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 25
+VLS + ++D + PHLL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 27.9 bits (59), Expect = 0.97
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 176 ALVSAKTQKHVERVVTVALVREEVQPMRVCHRR 274
++V K K E+++ AL RE V+P R H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 437 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 345
AF LW+YS+ L+L + W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = +1
Query: 58 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 204
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 205 RRKGR 219
R+ R
Sbjct: 349 RKSLR 353
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 112 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 228
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 253 WLYLFSYQSHSDDPFYVLLCFCGHERGS 170
W Y+S D FY ++ F H RGS
Sbjct: 824 WGETMVYESIISDDFYSMIRFLVHHRGS 851
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 1 SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 126
S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = -3
Query: 267 WHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILD 130
++ + C S T + TC +TSA +Y RF+ D+ D
Sbjct: 297 YYAVVECDSVRTAKVI--YETCDGAEYETSANIYDLRFIPDDVTFD 340
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 477 LSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHV 367
LSL K + + +LL + + H HTLV E +TL+L V
Sbjct: 324 LSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,117
Number of Sequences: 5004
Number of extensions: 42133
Number of successful extensions: 141
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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