Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303B09f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 265 2e-71
SB_7313| Best HMM Match : IQ (HMM E-Value=0.00059) 31 0.58
SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3) 30 1.0
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4) 29 3.1
SB_34357| Best HMM Match : UBX (HMM E-Value=0.28) 28 4.1
SB_43472| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7) 27 7.1
SB_55696| Best HMM Match : SNF7 (HMM E-Value=0) 27 9.4
SB_55695| Best HMM Match : SNF7 (HMM E-Value=0) 27 9.4
SB_51940| Best HMM Match : Glyco_transf_22 (HMM E-Value=1.8) 27 9.4
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 265 bits (649), Expect = 2e-71
Identities = 123/172 (71%), Positives = 142/172 (82%)
Frame = +1
Query: 4 SLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRAR 183
+L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP VHSRAR
Sbjct: 31 TLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIVHSRAR 90
Query: 184 VRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHS 363
VRK EAR KGRH G GKR+GTANARMPQK +W AKKID H+YHS
Sbjct: 91 VRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHS 150
Query: 364 LYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEXRRNKVKEARKRRE 519
LYMK+KGNVFKNKRVLMEYIH+KKAEKAR+K+LSDQAE RRNK K A++RR+
Sbjct: 151 LYMKSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQRRD 202
>SB_7313| Best HMM Match : IQ (HMM E-Value=0.00059)
Length = 104
Score = 31.1 bits (67), Expect = 0.58
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +1
Query: 334 KKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEXRRNKVKEARKR 513
K I RHL K K +N +ME + +K+A +M +QAE R K +E RKR
Sbjct: 18 KYIRRHLAKKQLKKLKDEK-QNYEEMMEKL-QKEAWLKIVQMEREQAEKERQKEEEERKR 75
Query: 514 RE 519
R+
Sbjct: 76 RK 77
>SB_31152| Best HMM Match : DUF112 (HMM E-Value=4.3)
Length = 400
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -3
Query: 270 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 103
L++TR+ C SSL VT S + V G+Y R D + L VL G+
Sbjct: 108 LYNTRVTCDSSLYNTRVTCDSRMYLVLLTVLPGLYNTRVTCDSRMYLVLLTVLPGL 163
>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 175 RARVRKNTEARRKGRHCGFGKRRGTANAR 261
+A RK RR+ R G K+R TANAR
Sbjct: 17 KANSRKKRRRRRRPRLTGLSKQRQTANAR 45
>SB_57068| Best HMM Match : NAD4L (HMM E-Value=9.4)
Length = 177
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -3
Query: 270 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 103
L++TR+ C S L A VT S + V G+Y R D + + VL G+
Sbjct: 68 LYNTRVTCGSRLYNARVTCDSRMYLVLLTVLQGLYNTRVTCDSRMYLVILTVLPGL 123
>SB_34357| Best HMM Match : UBX (HMM E-Value=0.28)
Length = 219
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 388 VFKNKRVLMEYIHRKKAEKARTKMLSDQAEXRRNKVKEARKRR 516
+FK +R +E R EK R ++ +Q ++ ++++ R+RR
Sbjct: 47 IFKEQREQLEESSRIDKEKDRLRLEEEQELTKQEEIRQKRRRR 89
>SB_43472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 388 VFKNKRVLMEYIHRKKAEKARTKMLSDQAEXRRNKVKEARKRR 516
+FK +R +E R EK R ++ +Q ++ ++++ R+RR
Sbjct: 67 IFKEQREQLEESSRIDKEKDRLRLEEEQELTKQEEIRQKRRRR 109
>SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7)
Length = 434
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 391 FKNKRVLMEYIHRKKAEKARTKMLSDQAEXRRNKVKEARKRR 516
FK +R+L E +++ E+ R KML AE R + A+KRR
Sbjct: 292 FKERRLLAE---QEEEEEFRQKMLQKFAEDDRIEQMNAQKRR 330
>SB_55696| Best HMM Match : SNF7 (HMM E-Value=0)
Length = 225
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 376 AKGNVFKNKRVLMEYIHRKK 435
AK NV KNKR+ ++ + RKK
Sbjct: 61 AKANVKKNKRIALQALKRKK 80
>SB_55695| Best HMM Match : SNF7 (HMM E-Value=0)
Length = 225
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 376 AKGNVFKNKRVLMEYIHRKK 435
AK NV KNKR+ ++ + RKK
Sbjct: 61 AKANVKKNKRIALQALKRKK 80
>SB_51940| Best HMM Match : Glyco_transf_22 (HMM E-Value=1.8)
Length = 414
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -3
Query: 270 LWHTRIGCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFLDDETILDHLTDVLSGV 103
L++T + C S L A VT S + V G+Y R D + L VL G+
Sbjct: 192 LYNTGVTCDSCLYNARVTCDSRMYLVLLTVLPGLYNTRVTCDSRMYLVLLTVLPGL 247
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,883,619
Number of Sequences: 59808
Number of extensions: 347143
Number of successful extensions: 1256
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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