Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B08f
         (408 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal prot...   191   3e-49
X13625-1|CAB38441.1|  114|Drosophila melanogaster protein ( Dros...   191   3e-49
AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p pro...   191   3e-49
AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-P...   191   3e-49
AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-P...   191   3e-49
AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-P...   191   3e-49
J03138-1|AAA28724.1| 1095|Drosophila melanogaster protein ( D.me...    29   1.8  
BT003293-1|AAO25053.1| 1095|Drosophila melanogaster GH28834p pro...    29   1.8  
AF181641-1|AAD55427.1| 1095|Drosophila melanogaster norpA protein.     29   1.8  
AE014298-627|AAN09121.1| 1095|Drosophila melanogaster CG3620-PB,...    29   1.8  
AE014298-626|AAF45942.2| 1095|Drosophila melanogaster CG3620-PA,...    29   1.8  
AE014298-625|AAX52475.1| 1095|Drosophila melanogaster CG3620-PD,...    29   1.8  
AE014298-624|AAX52474.1| 1095|Drosophila melanogaster CG3620-PC,...    29   1.8  
AY061244-1|AAL28792.1|  664|Drosophila melanogaster LD18373p pro...    28   5.4  
AE014298-1641|AAF48061.1|  664|Drosophila melanogaster CG11696-P...    28   5.4  
BT021222-1|AAX33370.1|  822|Drosophila melanogaster RH55640p pro...    27   9.5  
AE014134-2947|AAF53680.2|  822|Drosophila melanogaster CG10333-P...    27   9.5  

>X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal protein
           S31 protein.
          Length = 114

 Score =  191 bits (465), Expect = 3e-49
 Identities = 86/106 (81%), Positives = 96/106 (90%)
 Frame = +3

Query: 21  RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 200
           +KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++  +
Sbjct: 3   KKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSY 62

Query: 201 QLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 338
            LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 63  VLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>X13625-1|CAB38441.1|  114|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for putative ribosomal
           protein S31. ).
          Length = 114

 Score =  191 bits (465), Expect = 3e-49
 Identities = 86/106 (81%), Positives = 96/106 (90%)
 Frame = +3

Query: 21  RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 200
           +KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++  +
Sbjct: 3   KKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSY 62

Query: 201 QLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 338
            LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 63  VLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p
           protein.
          Length = 114

 Score =  191 bits (465), Expect = 3e-49
 Identities = 86/106 (81%), Positives = 96/106 (90%)
 Frame = +3

Query: 21  RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 200
           +KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++  +
Sbjct: 3   KKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSY 62

Query: 201 QLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 338
            LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 63  VLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-PC,
           isoform C protein.
          Length = 114

 Score =  191 bits (465), Expect = 3e-49
 Identities = 86/106 (81%), Positives = 96/106 (90%)
 Frame = +3

Query: 21  RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 200
           +KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++  +
Sbjct: 3   KKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSY 62

Query: 201 QLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 338
            LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 63  VLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-PB,
           isoform B protein.
          Length = 114

 Score =  191 bits (465), Expect = 3e-49
 Identities = 86/106 (81%), Positives = 96/106 (90%)
 Frame = +3

Query: 21  RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 200
           +KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++  +
Sbjct: 3   KKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSY 62

Query: 201 QLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 338
            LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 63  VLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-PA,
           isoform A protein.
          Length = 114

 Score =  191 bits (465), Expect = 3e-49
 Identities = 86/106 (81%), Positives = 96/106 (90%)
 Frame = +3

Query: 21  RKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMF 200
           +KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++  +
Sbjct: 3   KKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSY 62

Query: 201 QLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSR 338
            LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 63  VLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>J03138-1|AAA28724.1| 1095|Drosophila melanogaster protein (
            D.melanogaster phospholipaseC (norpA) mRNA, complete cds.
            ).
          Length = 1095

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 147  VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPKSNFP 323
            V+AA ++ + D     +  L    AK+    +  + + K ++ +++KDRR+R   ++N  
Sbjct: 977  VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036

Query: 324  RDMSRPQAV 350
            R M   + +
Sbjct: 1037 RFMEEKKQI 1045


>BT003293-1|AAO25053.1| 1095|Drosophila melanogaster GH28834p protein.
          Length = 1095

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 147  VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPKSNFP 323
            V+AA ++ + D     +  L    AK+    +  + + K ++ +++KDRR+R   ++N  
Sbjct: 977  VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036

Query: 324  RDMSRPQAV 350
            R M   + +
Sbjct: 1037 RFMEEKKQI 1045


>AF181641-1|AAD55427.1| 1095|Drosophila melanogaster norpA protein.
          Length = 1095

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 147  VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPKSNFP 323
            V+AA ++ + D     +  L    AK+    +  + + K ++ +++KDRR+R   ++N  
Sbjct: 977  VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036

Query: 324  RDMSRPQAV 350
            R M   + +
Sbjct: 1037 RFMEEKKQI 1045


>AE014298-627|AAN09121.1| 1095|Drosophila melanogaster CG3620-PB,
            isoform B protein.
          Length = 1095

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 147  VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPKSNFP 323
            V+AA ++ + D     +  L    AK+    +  + + K ++ +++KDRR+R   ++N  
Sbjct: 977  VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036

Query: 324  RDMSRPQAV 350
            R M   + +
Sbjct: 1037 RFMEEKKQI 1045


>AE014298-626|AAF45942.2| 1095|Drosophila melanogaster CG3620-PA,
            isoform A protein.
          Length = 1095

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 147  VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPKSNFP 323
            V+AA ++ + D     +  L    AK+    +  + + K ++ +++KDRR+R   ++N  
Sbjct: 977  VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036

Query: 324  RDMSRPQAV 350
            R M   + +
Sbjct: 1037 RFMEEKKQI 1045


>AE014298-625|AAX52475.1| 1095|Drosophila melanogaster CG3620-PD,
            isoform D protein.
          Length = 1095

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 147  VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPKSNFP 323
            V+AA ++ + D     +  L    AK+    +  + + K ++ +++KDRR+R   ++N  
Sbjct: 977  VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036

Query: 324  RDMSRPQAV 350
            R M   + +
Sbjct: 1037 RFMEEKKQI 1045


>AE014298-624|AAX52474.1| 1095|Drosophila melanogaster CG3620-PC,
            isoform C protein.
          Length = 1095

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 147  VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPKSNFP 323
            V+AA ++ + D     +  L    AK+    +  + + K ++ +++KDRR+R   ++N  
Sbjct: 977  VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036

Query: 324  RDMSRPQAV 350
            R M   + +
Sbjct: 1037 RFMEEKKQI 1045


>AY061244-1|AAL28792.1|  664|Drosophila melanogaster LD18373p
           protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 42  RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRN 143
           +A H  G V  V+CT C R +  +++++K + R+
Sbjct: 465 KALHPDGPVAEVQCTLCGRWLRDERSLRKHLARH 498


>AE014298-1641|AAF48061.1|  664|Drosophila melanogaster CG11696-PA
           protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 42  RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRN 143
           +A H  G V  V+CT C R +  +++++K + R+
Sbjct: 465 KALHPDGPVAEVQCTLCGRWLRDERSLRKHLARH 498


>BT021222-1|AAX33370.1|  822|Drosophila melanogaster RH55640p
           protein.
          Length = 822

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 267 RNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 356
           R+RS++DR  R  P+   PRD  R ++ +R
Sbjct: 52  RSRSREDRNRRRSPERQRPRDNVRERSRER 81


>AE014134-2947|AAF53680.2|  822|Drosophila melanogaster CG10333-PA
           protein.
          Length = 822

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 267 RNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 356
           R+RS++DR  R  P+   PRD  R ++ +R
Sbjct: 52  RSRSREDRNRRRSPERQRPRDNVRERSRER 81


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,846,432
Number of Sequences: 53049
Number of extensions: 296165
Number of successful extensions: 940
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)