BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS303B08f (408 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z92834-4|CAB07387.1| 117|Caenorhabditis elegans Hypothetical pr... 158 1e-39 AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 32 0.18 AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 32 0.18 Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical pr... 28 2.3 Z81491-2|CAB04020.1| 181|Caenorhabditis elegans Hypothetical pr... 27 6.9 >Z92834-4|CAB07387.1| 117|Caenorhabditis elegans Hypothetical protein F39B2.6 protein. Length = 117 Score = 158 bits (384), Expect = 1e-39 Identities = 71/95 (74%), Positives = 78/95 (82%) Frame = +3 Query: 24 KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQ 203 KRRN GR K RGHV +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y + Sbjct: 4 KRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYA 63 Query: 204 LPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 308 LPKLY KLHYC++CAIHSKVVRNRS++ RR R PP Sbjct: 64 LPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPP 98 >AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical protein Y111B2A.10b protein. Length = 312 Score = 31.9 bits (69), Expect = 0.18 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Frame = +3 Query: 12 GTRRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVY 191 G KR+ A H H+K ++C NC+ +K+++ +IR+ E A ++ A Sbjct: 64 GKAYKRKKNLDA-HMALHLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCS 122 Query: 192 PMFQL-PKLYAKLHYCVSCAIHSKVV-RNRSKKDRRIRTPPKS 314 +L P K H C K++ + R K ++++ P S Sbjct: 123 ICKELFPSTSVKTHEWY-CKNREKIIEKQRVSKILKVQSLPSS 164 >AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical protein Y111B2A.10a protein. Length = 430 Score = 31.9 bits (69), Expect = 0.18 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Frame = +3 Query: 12 GTRRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVY 191 G KR+ A H H+K ++C NC+ +K+++ +IR+ E A ++ A Sbjct: 182 GKAYKRKKNLDA-HMALHLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCS 240 Query: 192 PMFQL-PKLYAKLHYCVSCAIHSKVV-RNRSKKDRRIRTPPKS 314 +L P K H C K++ + R K ++++ P S Sbjct: 241 ICKELFPSTSVKTHEWY-CKNREKIIEKQRVSKILKVQSLPSS 282 >Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical protein B0001.5 protein. Length = 553 Score = 28.3 bits (60), Expect = 2.3 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = +2 Query: 230 LLRVMRHPQQSCQEQIEERQKNPYSSQE*LP*GHVTSTGSAK 355 ++ V + P +S ++ + QKN Y+S E GH TS+ +A+ Sbjct: 374 VINVYKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411 >Z81491-2|CAB04020.1| 181|Caenorhabditis elegans Hypothetical protein D1086.2 protein. Length = 181 Score = 26.6 bits (56), Expect = 6.9 Identities = 16/66 (24%), Positives = 31/66 (46%) Frame = +3 Query: 141 NIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNF 320 N++ +RD N + ++L + L YC+ +++ V NR ++T KS Sbjct: 82 NVITCKKLRDKNRNVIKQCYELDLVGTPLSYCIQRKLNADKVANRC-----VKTYLKSKD 136 Query: 321 PRDMSR 338 R++ R Sbjct: 137 TRELKR 142 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,811,643 Number of Sequences: 27780 Number of extensions: 139631 Number of successful extensions: 382 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 373 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 382 length of database: 12,740,198 effective HSP length: 74 effective length of database: 10,684,478 effective search space used: 651753158 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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