Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.9  
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    26   3.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   6.8  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   9.0  

>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -2

Query: 352 FNIIEKGFNDKSLRAVTQQQKFILLTFKKKIENS 251
           +N IE+ F DK+  A T  Q FI +  +KK +NS
Sbjct: 124 WNEIEENFEDKTWEADTTGQ-FIQIESRKKRKNS 156


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 382 WKMYSVGFYSCNRICDAYFLYCVVHCE 462
           W        SC  +CD Y + C++H +
Sbjct: 492 WGSTPAAIDSCLSVCDEYDVQCLIHTD 518


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 400 GFYSCNRICDAYFLYCVVH-CEK 465
           G+YSCN  C  +F  C +H C K
Sbjct: 406 GYYSCNNPCTLFF-DCGLHKCSK 427


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 152  FNVTVFIIPLSVISDFK*ICF*TLLIYMWMYHGG 253
            ++ T FII   ++      CF TL  + W Y  G
Sbjct: 1161 YSRTAFIIAFFLVEAVINCCFATLFFFGWYYPSG 1194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,938
Number of Sequences: 5004
Number of extensions: 36412
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)