Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    31   0.66 
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    31   0.66 

>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -2

Query: 304  TQQQKFILLTFKKKIENSTVIHPHINQ*CLKADLLKITNYRKRNDK 167
            T+QQK +LL++KKK  +      ++ +     D L + ++ K+N+K
Sbjct: 883  TKQQKLVLLSYKKKKVDEKKFQQYLKEVENVLDKLDVNSFCKKNEK 928


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -2

Query: 304  TQQQKFILLTFKKKIENSTVIHPHINQ*CLKADLLKITNYRKRNDK 167
            T+QQK +LL++KKK  +      ++ +     D L + ++ K+N+K
Sbjct: 883  TKQQKLVLLSYKKKKVDEKKFQQYLKEVENVLDKLDVNSFCKKNEK 928


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 30.7 bits (66), Expect = 0.66
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -2

Query: 304  TQQQKFILLTFKKKIENSTVIHPHINQ*CLKADLLKITNYRKRNDK 167
            T+QQK +LL++KKK  +      ++ +     D L + ++ K+N+K
Sbjct: 883  TKQQKLVLLSYKKKKVDEKKFQQYLKEVENVLDKLDVNSFCKKNEK 928


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,515,187
Number of Sequences: 27780
Number of extensions: 199579
Number of successful extensions: 480
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)