Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13900.1 68415.m01542 DC1 domain-containing protein contains ...    29   1.9  
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    28   4.4  
At3g26750.1 68416.m03346 expressed protein                             28   4.4  
At1g09995.1 68414.m01127 expressed protein                             28   4.4  
At2g17600.1 68415.m02036 DC1 domain-containing protein contains ...    27   7.7  

>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 661

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +1

Query: 400 GFYSCNRICDAYFLYCVVHCEKCFLIRPGNTFXF 501
           GFY+C+  C    ++C++  E  ++++P  T  +
Sbjct: 580 GFYACDHCCTTLHVHCLLG-EDMYMLKPSQTITY 612


>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 403 FYSCNRICDAYFLYCVVHCEKCFLIRPGNTF 495
           FYSC++ C    + CV+   K   +RPG++F
Sbjct: 466 FYSCDKCCSTLHIDCVL--GKSPYMRPGHSF 494


>At3g26750.1 68416.m03346 expressed protein
          Length = 526

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 207 IYLKSLITESGMINTVTLNPSLAVIRGSCASE 112
           + +K L T+S + N V LNP+     G C+S+
Sbjct: 425 VLVKDLTTKSPLFNIVILNPNTFSSTGLCSSQ 456


>At1g09995.1 68414.m01127 expressed protein
          Length = 88

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = -2

Query: 286 ILLTFKKKIENSTVIHPHINQ*CLKADLLKITNYRKRN--DKYCNIKSIFGRYTRIMR 119
           I L F  +I++S      I++ CL     KI+   K+   D +C+I+S  GR+  ++R
Sbjct: 3   IELDFVPQIDSSN----QIDERCLDLQKKKISQVSKKKLEDIHCSIESYLGRFQNLLR 56


>At2g17600.1 68415.m02036 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 580

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 403 FYSCNRICDAYFLYCVVHCEKCFLIRPGNTFXF 501
           FYSCN+ C    L C+        I+ G TF F
Sbjct: 492 FYSCNKCCITIHLECIF--GSSVYIKSGYTFYF 522


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,577,984
Number of Sequences: 28952
Number of extensions: 173537
Number of successful extensions: 415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)