Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303B05f
(512 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 183 1e-47
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 151 6e-38
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 98 8e-22
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 96 3e-21
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 85 8e-18
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 80 2e-16
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 77 2e-15
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 75 8e-15
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 74 1e-14
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 69 5e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 64 9e-12
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 62 4e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 61 8e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 60 2e-10
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 60 2e-10
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 57 2e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 52 4e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 50 3e-07
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 47 2e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 46 3e-06
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 43 2e-05
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 43 3e-05
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 36 0.003
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.31
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 0.94
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.2
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 2.2
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 2.9
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 3.8
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 5.0
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 25 5.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 5.0
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 25 8.8
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 8.8
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 183 bits (446), Expect = 1e-47
Identities = 86/120 (71%), Positives = 107/120 (89%)
Frame = +3
Query: 120 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQ 299
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQ
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
Query: 300 SGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQXVVDSLLVITLNAKCHACIG 479
SGTGKTATFSIS+LQ+IDTS+++CQALILAPTRELAQQIQ VV +L + +N +CHACIG
Sbjct: 65 SGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGDL-MNVECHACIG 123
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 151 bits (366), Expect = 6e-38
Identities = 79/121 (65%), Positives = 93/121 (76%), Gaps = 1/121 (0%)
Frame = +3
Query: 120 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 296
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQA
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 297 QSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQXVVDSLLVITLNAKCHACI 476
QSGTGKTATFSI ILQ ID S+R+ QALIL+PTRELA QIQ VV L +N +CHACI
Sbjct: 66 QSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVV-LALGDHMNVQCHACI 124
Query: 477 G 479
G
Sbjct: 125 G 125
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 97.9 bits (233), Expect = 8e-22
Identities = 53/126 (42%), Positives = 75/126 (59%), Gaps = 4/126 (3%)
Frame = +3
Query: 72 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 239
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 240 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQ 419
IQ+ +I + GRD++A+A++GTGKTA F I L+++DT + Q LIL PTRELA Q
Sbjct: 70 IQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTS 129
Query: 420 XVVDSL 437
V +L
Sbjct: 130 QVCKTL 135
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 95.9 bits (228), Expect = 3e-21
Identities = 45/95 (47%), Positives = 72/95 (75%), Gaps = 2/95 (2%)
Frame = +3
Query: 159 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKTATFSI 332
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 333 SILQQIDTSIRECQALILAPTRELAQQIQXVVDSL 437
++L ++D S+ + QA+ LAP+RELA+QI VV +
Sbjct: 173 TMLSRVDASVPKPQAICLAPSRELARQIMDVVTEM 207
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 84.6 bits (200), Expect = 8e-18
Identities = 44/98 (44%), Positives = 64/98 (65%), Gaps = 6/98 (6%)
Frame = +3
Query: 162 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 341
+TF D NL L R I+ FEKP+++Q I ++G+D++AQA++G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 342 Q------QIDTSIRECQALILAPTRELAQQIQXVVDSL 437
+ QID + R AL+L PTRELAQQ+ V++ L
Sbjct: 74 ELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL 111
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 80.2 bits (189), Expect = 2e-16
Identities = 45/84 (53%), Positives = 52/84 (61%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 347
F D LK ELLR I GFE PS +QQ I I G DV+ QA+SG GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 348 IDTSIRECQALILAPTRELAQQIQ 419
I+ E L+L TRELA QI+
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIK 136
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 77.0 bits (181), Expect = 2e-15
Identities = 44/138 (31%), Positives = 75/138 (54%)
Frame = +3
Query: 24 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 203
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 204 GIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALI 383
GF+ P+ IQQ AI + RDVI AQ+G+GKTA F++ ++Q++ + A++
Sbjct: 60 ACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVV 119
Query: 384 LAPTRELAQQIQXVVDSL 437
LAPTRELA QI +++
Sbjct: 120 LAPTRELAYQISEQFEAI 137
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 74.5 bits (175), Expect = 8e-15
Identities = 37/89 (41%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 347
F M L + LLR I+ GF+ P+ IQ++ I ++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 348 IDTSI--RECQALILAPTRELAQQIQXVV 428
+ +++ +ALIL+P RELA Q VV
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVV 159
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 73.7 bits (173), Expect = 1e-14
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Frame = +3
Query: 165 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 344
+F MNL +L+G+ GFE P+ IQ + I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 345 QI---DTSIRECQALILAPTRELAQQIQXVVDSLLVITLNAKCHACIG 479
++ + + LIL PTRELA Q V + T C CIG
Sbjct: 320 RLLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTDIMVC-LCIG 366
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 68.5 bits (160), Expect = 5e-13
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 4/98 (4%)
Frame = +3
Query: 159 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---S 329
+E F D+ L E + + I GFE + IQ+R+I P + GRDV+ A++G+GKT F +
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 330 ISILQQIDTSIRE-CQALILAPTRELAQQIQXVVDSLL 440
I +L + R +I++PTRELA QI V LL
Sbjct: 148 IEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELL 185
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 64.5 bits (150), Expect = 9e-12
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Frame = +3
Query: 144 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 323
D + +++ L E+L+ + +++PS+IQ+ AI +Q +D+I A++G+GKTA
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAA 302
Query: 324 FSISILQQID--TSIRECQ------ALILAPTRELAQQIQXVVDSLLVITLNAKCHACIG 479
F I ++ I + E A++LAPTRELAQQIQ V + L +C + +G
Sbjct: 303 FIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ-VEGNKFAEPLGFRCVSVVG 361
Query: 480 WH 485
H
Sbjct: 362 GH 363
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 62.5 bits (145), Expect = 4e-11
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Frame = +3
Query: 159 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 338
V + +L E+L + GF KP IQ I G D+I +A +G+GKT F I I
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 339 LQQI--DTSIRECQALILAPTRELAQQI 416
L+ + + QAL++APTRELA QI
Sbjct: 181 LEHCLRNVDAKYVQALVVAPTRELAHQI 208
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 61.3 bits (142), Expect = 8e-11
Identities = 38/105 (36%), Positives = 59/105 (56%)
Frame = +3
Query: 162 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 341
++F D+ + L+ + A +P+ IQ+ I ++GR+ I A++G+GKTA F++ I+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 342 QQIDTSIRECQALILAPTRELAQQIQXVVDSLLVITLNAKCHACI 476
++ ALIL PTRELA QI + L LN K HA I
Sbjct: 67 EKWSKDPSGIFALILTPTRELAIQIDEQF-AALGANLNLK-HALI 109
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 60.1 bits (139), Expect = 2e-10
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Frame = +3
Query: 144 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 323
D + V ++ L + + I + G+EKP++IQ +AI GRDVI A++G+GKT
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 324 FSISILQQI--DTSIRECQ---ALILAPTRELAQQIQXVVDSLLVITLNAKCHACIGWHQ 488
F + + + I ++ + A+I+ PTRELA QI L + LN + AC +
Sbjct: 472 FLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKL-LNIR--ACCAYGG 528
Query: 489 CPLK 500
P+K
Sbjct: 529 APIK 532
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 60.1 bits (139), Expect = 2e-10
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Frame = +3
Query: 165 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 344
+F +N+ + L + A GF+K + +Q AI ++ +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 345 QI---DTSIRECQALILAPTRELAQQIQXVVDSLL 440
++ DT ALI+APTRELA QI V LL
Sbjct: 62 KVTRRDTDETGLGALIVAPTRELATQIFNVTKELL 96
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 56.8 bits (131), Expect = 2e-09
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Frame = +3
Query: 159 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 338
V TF++ +L+ + GFE P+ IQQ+A + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 339 LQQIDTSIRECQ-----ALILAPTRELAQQIQ 419
+ I+ L+LAPTRELA QIQ
Sbjct: 181 IVHINAQPLLSPGDGPIVLVLAPTRELAVQIQ 212
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 52.4 bits (120), Expect = 4e-08
Identities = 31/94 (32%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 347
FD++++ +L G+ Y ++P+ IQ + GRDV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 348 ID---TSIRECQALILAPTRELAQQIQXVVDSLL 440
++ + + L+++PTRELA Q ++SL+
Sbjct: 227 LNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLI 260
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 49.6 bits (113), Expect = 3e-07
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Frame = +3
Query: 153 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 332
+ V+ F ++ L + + F + IQ++ I ++GRD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 333 SILQQID----TSIRECQALILAPTRELAQQ 413
+++ + TS+ AL+++PTRELA Q
Sbjct: 96 PLIENLYRKKWTSLDGLGALVISPTRELAIQ 126
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 46.8 bits (106), Expect = 2e-06
Identities = 38/104 (36%), Positives = 50/104 (48%), Gaps = 18/104 (17%)
Frame = +3
Query: 159 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 338
V F L LL+ I G+ +P+ +Q+ +I GRD++A AQ+G+GKTA F I
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 339 L--------------QQIDTSIRECQA----LILAPTRELAQQI 416
L Q R +A LILAPTREL QI
Sbjct: 228 LSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQI 271
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 46.0 bits (104), Expect = 3e-06
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Frame = +3
Query: 189 EELLRGIYAYGFEKPSAIQ----QRAIMPCIQG-RDVIAQAQSGTGKTATFSISILQQID 353
EE GI +K + + QR +P I RD++A A +G+GKT + ILQ++
Sbjct: 50 EEFPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQ 109
Query: 354 TSI-RECQALILAPTRELAQQIQXVVDSL 437
+ +A+I+APTREL +QI + L
Sbjct: 110 LHVPGGYRAIIVAPTRELCEQIYRQAEKL 138
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 43.2 bits (97), Expect = 2e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Frame = +3
Query: 219 GFEKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQQI-----DTSIRECQAL 380
GFEK + +QQR + + + QA++GTGKT F + + + + + ++
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSV 116
Query: 381 ILAPTRELAQQI 416
IL+PTRELA QI
Sbjct: 117 ILSPTRELALQI 128
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 42.7 bits (96), Expect = 3e-05
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 9/78 (11%)
Frame = +3
Query: 231 PSAIQQRAIMPCIQ--GRDVIAQAQSGTGKTATFSISILQQI-------DTSIRECQALI 383
P+AIQ + + +D +AQ+G+GKT + + I+Q++ T A+I
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVI 221
Query: 384 LAPTRELAQQIQXVVDSL 437
+APTREL QQI V + L
Sbjct: 222 MAPTRELCQQIYNVANKL 239
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 36.3 bits (80), Expect = 0.003
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +3
Query: 183 LKEELLRGIY-AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 359
L +EL+ +Y + EK Q AI G VI + +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LE 353
Query: 360 IRECQALILAPTRELAQ-QIQXVVDSL 437
+ A + PT+ LAQ Q + ++D L
Sbjct: 354 DNQSTAFFVFPTKSLAQDQKKSLIDIL 380
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.5 bits (63), Expect = 0.31
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 135 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD 281
LDT+W V + NL+ + + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 0.94
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 132 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 224
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +3
Query: 303 GTGKTATFSISILQQI----DTSIRECQALILAP-TRELAQQIQ 419
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 109 DLREWTLGHLTPT 147
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 26.2 bits (55), Expect = 2.9
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 9 RHEGNMSYSSERRSEDWPEDSKN--GPSKDQGSYDGPPGMDPGTLDTDWD 152
R +GN SY +E PE S N S D S D G DP L +++
Sbjct: 63 RSKGNQSYVPSSSNEPSPESSSNSDSSSSDDSSVDRLAG-DPFELGENFN 111
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 129 QGPFPEVHRNYLDPSMAHFWNPLANL 52
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 339 LQQIDTSIRECQALILAPTRELAQQIQXVVDSLLVITLNAKCH 467
++++ + R+ ++ ILA L+ Q + D+LLV+ N H
Sbjct: 1509 IERVGVNERQWRSWILASQSILSSQNGSITDALLVLKKNISMH 1551
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 335 DSTTNRYKHS*MSSFDPGSHKRAGPTNSXG 424
D+ TNR + SSFD S P+N+ G
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDG 516
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 5.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 138 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR 278
DTDWD +V + D++L+ RGI A G + + + P + +
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSK 660
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Frame = -2
Query: 511 GXNIFNGHWC-HPMQ-AW 464
G N FN WC HP Q AW
Sbjct: 263 GANFFNDLWCYHPKQSAW 280
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 24.6 bits (51), Expect = 8.8
Identities = 13/57 (22%), Positives = 28/57 (49%)
Frame = +3
Query: 282 VIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQIQXVVDSLLVITL 452
++AQA+ GK +I +Q +RE + I R+LA+ ++ ++ + +
Sbjct: 123 MVAQAKEKKGKHKQSTIEHYEQCSRRVRELSSKIWLIERKLAEFYMHLLKHMVAVCI 179
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,251,203
Number of Sequences: 5004
Number of extensions: 47797
Number of successful extensions: 187
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -