Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303B05f
(512 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 148 2e-36
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 146 8e-36
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 146 1e-35
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 144 3e-35
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 124 4e-29
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 94 4e-20
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 94 4e-20
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 93 1e-19
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 93 1e-19
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 92 2e-19
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 84 5e-17
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 84 5e-17
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 76 1e-14
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 75 4e-14
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 72 2e-13
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 70 1e-12
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 65 2e-11
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 65 2e-11
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 64 4e-11
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 64 5e-11
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 64 7e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 62 2e-10
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 62 2e-10
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 62 2e-10
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 60 7e-10
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 60 7e-10
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 60 9e-10
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 60 9e-10
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 60 1e-09
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 59 2e-09
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 59 2e-09
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 59 2e-09
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 59 2e-09
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 59 2e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 58 3e-09
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 57 8e-09
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 56 1e-08
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 55 2e-08
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 54 4e-08
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 54 4e-08
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 54 6e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 53 1e-07
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 53 1e-07
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 52 2e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 52 2e-07
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 52 2e-07
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 52 2e-07
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 52 2e-07
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 52 2e-07
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 52 3e-07
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 52 3e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 51 4e-07
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 50 7e-07
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 50 7e-07
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 50 1e-06
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 48 3e-06
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 46 1e-05
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 46 2e-05
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 45 3e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 44 5e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 42 2e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 40 7e-04
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 40 0.001
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 39 0.002
At3g10020.1 68416.m01202 expressed protein 33 0.15
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 29 2.4
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 28 3.2
At1g76010.1 68414.m08825 expressed protein 28 4.2
At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP ... 27 5.6
At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP ... 27 5.6
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 27 7.4
At3g46640.1 68416.m05063 myb family transcription factor contain... 27 9.8
At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family ... 27 9.8
At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa... 27 9.8
At2g14130.1 68415.m01574 Ulp1 protease family protein contains P... 27 9.8
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 148 bits (359), Expect = 2e-36
Identities = 74/113 (65%), Positives = 88/113 (77%)
Frame = +3
Query: 141 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 320
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTA
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 321 TFSISILQQIDTSIRECQALILAPTRELAQQIQXVVDSLLVITLNAKCHACIG 479
TF +LQQ+D S+ +CQAL+LAPTRELAQQI+ V+ + L L K HAC+G
Sbjct: 92 TFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHACVG 143
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 146 bits (354), Expect = 8e-36
Identities = 72/113 (63%), Positives = 88/113 (77%)
Frame = +3
Query: 141 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 320
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTA
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 321 TFSISILQQIDTSIRECQALILAPTRELAQQIQXVVDSLLVITLNAKCHACIG 479
TF +LQQ+D ++ +CQAL+LAPTRELAQQI+ V+ +L K HAC+G
Sbjct: 92 TFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQ-GVKVHACVG 143
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 146 bits (353), Expect = 1e-35
Identities = 72/116 (62%), Positives = 90/116 (77%)
Frame = +3
Query: 132 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTG 311
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTG
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTG 90
Query: 312 KTATFSISILQQIDTSIRECQALILAPTRELAQQIQXVVDSLLVITLNAKCHACIG 479
KTATF +LQQ+D S+ +CQAL+LAPTRELAQQI+ V+ + L L K AC+G
Sbjct: 91 KTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRA-LGDYLGVKAQACVG 145
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 144 bits (349), Expect = 3e-35
Identities = 67/113 (59%), Positives = 89/113 (78%)
Frame = +3
Query: 141 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 320
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP +QGRDVIAQAQSGTGKT+
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTS 87
Query: 321 TFSISILQQIDTSIRECQALILAPTRELAQQIQXVVDSLLVITLNAKCHACIG 479
++S+ Q +DTS RE QALIL+PTRELA Q + + + + + N + HACIG
Sbjct: 88 MIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQA-IGLHANIQAHACIG 139
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 124 bits (299), Expect = 4e-29
Identities = 55/107 (51%), Positives = 83/107 (77%)
Frame = +3
Query: 159 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 338
+++FDDM + +++LRG+Y YG++KPS IQQRA++P ++GRDVIAQAQSGTGKT+ +IS+
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 339 LQQIDTSIRECQALILAPTRELAQQIQXVVDSLLVITLNAKCHACIG 479
Q ++ S R+ Q L+L+P+RELA Q + + ++ T N + HACIG
Sbjct: 81 CQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAHT-NIQAHACIG 126
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 94.3 bits (224), Expect = 4e-20
Identities = 46/90 (51%), Positives = 61/90 (67%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 347
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 348 IDTSIRECQALILAPTRELAQQIQXVVDSL 437
ID QA+I+ PTRELA Q V L
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKEL 222
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 94.3 bits (224), Expect = 4e-20
Identities = 46/90 (51%), Positives = 61/90 (67%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 347
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 348 IDTSIRECQALILAPTRELAQQIQXVVDSL 437
ID QA+I+ PTRELA Q V L
Sbjct: 193 IDQDNNVIQAVIIVPTRELALQTSQVCKEL 222
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 93.1 bits (221), Expect = 1e-19
Identities = 45/90 (50%), Positives = 61/90 (67%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 347
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 348 IDTSIRECQALILAPTRELAQQIQXVVDSL 437
ID + QA+IL PTRELA Q V L
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKEL 215
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 93.1 bits (221), Expect = 1e-19
Identities = 45/90 (50%), Positives = 61/90 (67%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 347
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 348 IDTSIRECQALILAPTRELAQQIQXVVDSL 437
ID + QA+IL PTRELA Q V L
Sbjct: 186 IDPNNNVIQAMILVPTRELALQTSQVCKEL 215
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 91.9 bits (218), Expect = 2e-19
Identities = 46/90 (51%), Positives = 59/90 (65%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 347
F+D LK +LLRGIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I L++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 348 IDTSIRECQALILAPTRELAQQIQXVVDSL 437
ID QA+IL PTRELA Q V L
Sbjct: 216 IDPENNVIQAVILVPTRELALQTSQVCKEL 245
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 84.2 bits (199), Expect = 5e-17
Identities = 46/83 (55%), Positives = 52/83 (62%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 347
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 348 IDTSIRECQALILAPTRELAQQI 416
I+ S + AL+L TRELA QI
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQI 130
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 84.2 bits (199), Expect = 5e-17
Identities = 46/83 (55%), Positives = 52/83 (62%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 347
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 348 IDTSIRECQALILAPTRELAQQI 416
I+ S + AL+L TRELA QI
Sbjct: 108 IEPSPGQVSALVLCHTRELAYQI 130
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 76.2 bits (179), Expect = 1e-14
Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYA-YGFEKPSAIQQRAIMPCIQG---RDVIAQAQSGTGKTATFSIS 335
F+D+NL EL++G+Y FEKPS IQ ++ P I + +IAQA +G+GKT F +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISL-PMIMTPPHKHLIAQAHNGSGKTTCFVLG 151
Query: 336 ILQQIDTSIRECQALILAPTRELAQQIQXVVDSL 437
+L ++D ++RE QAL + PTRELA Q V+ +
Sbjct: 152 MLSRVDPTLREPQALCICPTRELANQNMEVLQKM 185
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 74.5 bits (175), Expect = 4e-14
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Frame = +3
Query: 162 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 341
+TF ++NL LLR G++KP+ IQ I + GRD+ A A +G+GKTA F++ L
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTL 226
Query: 342 QQI---DTSIRECQALILAPTRELAQQIQXVVDSLLVITLNAKCHACIG 479
+++ + + LIL PTRELA QI ++ +L T + KC +G
Sbjct: 227 ERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFT-DIKCGLIVG 274
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 72.1 bits (169), Expect = 2e-13
Identities = 37/103 (35%), Positives = 66/103 (64%), Gaps = 6/103 (5%)
Frame = +3
Query: 150 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 329
++ ++F+++ L L+R + G EKP+ IQQ AI ++G+DV+A+A++G+GKT +
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 330 ISILQQI---DTSIRE---CQALILAPTRELAQQIQXVVDSLL 440
+ +LQ++ D+ ++ A IL P+REL QQ+ V SL+
Sbjct: 102 LPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLI 144
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 69.7 bits (163), Expect = 1e-12
Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 12/122 (9%)
Frame = +3
Query: 150 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 329
++VV+TF ++ ++EEL++ G++ PS IQ A+ ++G+DVI AQ+G+GKT F+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFA 64
Query: 330 ISILQQIDTSIRECQ------------ALILAPTRELAQQIQXVVDSLLVITLNAKCHAC 473
I ILQ + + + + A +L+PTRELA QI ++ L ++ +C
Sbjct: 65 IPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEA-LGADISLRCAVL 123
Query: 474 IG 479
+G
Sbjct: 124 VG 125
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 65.3 bits (152), Expect = 2e-11
Identities = 33/88 (37%), Positives = 54/88 (61%), Gaps = 6/88 (6%)
Frame = +3
Query: 174 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI- 350
D+ + E+++ + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 179
Query: 351 -----DTSIRECQALILAPTRELAQQIQ 419
+ Q L+LAPTRELA+Q++
Sbjct: 180 KFNAKHGRGKNPQCLVLAPTRELARQVE 207
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 65.3 bits (152), Expect = 2e-11
Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 8/95 (8%)
Frame = +3
Query: 159 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 338
+ ++++ L ELL+ + G++KPS IQ AI +Q RDVI A++G+GKTA F + +
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371
Query: 339 LQQI--------DTSIRECQALILAPTRELAQQIQ 419
L I + A+++APTRELAQQI+
Sbjct: 372 LAYISRLPPMSEENETEGPYAVVMAPTRELAQQIE 406
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 64.5 bits (150), Expect = 4e-11
Identities = 35/104 (33%), Positives = 55/104 (52%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 347
F+ + L E + G KP+ +Q + + GRDV+ AQ+G+GKTA F++ IL +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 348 IDTSIRECQALILAPTRELAQQIQXVVDSLLVITLNAKCHACIG 479
+ AL++ PTRELA Q+ + L LN +C +G
Sbjct: 120 LAEDPYGVFALVVTPTRELAFQLAEQFKA-LGSCLNLRCSVIVG 162
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 64.1 bits (149), Expect = 5e-11
Identities = 31/84 (36%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 347
F+ +NL + I G++ P+ IQ++ + + G DV+A A++G+GKTA F I +L++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 348 IDTSIRE--CQALILAPTRELAQQ 413
+ + + +ALIL+PTR+LA+Q
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQ 113
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 63.7 bits (148), Expect = 7e-11
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 5/96 (5%)
Frame = +3
Query: 144 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 323
D + V+TF+D +++ I +EKP+AIQ +A+ + GRDVI A++G+GKTA
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAA 281
Query: 324 FSISILQQI--DTSIRECQ---ALILAPTRELAQQI 416
F + ++ I ++ + +I APTRELA QI
Sbjct: 282 FVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQI 317
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 62.5 bits (145), Expect = 2e-10
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 6/88 (6%)
Frame = +3
Query: 174 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI- 350
++ + E+++ + + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 351 -----DTSIRECQALILAPTRELAQQIQ 419
R L+LAPTRELA+Q++
Sbjct: 168 KYNAKHGRGRNPLCLVLAPTRELARQVE 195
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 62.1 bits (144), Expect = 2e-10
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Frame = +3
Query: 144 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 323
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 324 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQ 419
+ + L + R Q LILAPTRELA QIQ
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQ 255
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 62.1 bits (144), Expect = 2e-10
Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Frame = +3
Query: 144 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 323
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 324 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQ 419
+ + L + R Q LILAPTRELA QIQ
Sbjct: 219 YLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQ 255
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 60.5 bits (140), Expect = 7e-10
Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Frame = +3
Query: 162 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SI 332
+TF+ ++L + + I GF + + IQ +AI P + G DV+ A++G+GKT F ++
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 333 SILQQIDTSIRE-CQALILAPTRELAQQIQXVVDSLL 440
+L ++ + R L++ PTRELA Q V LL
Sbjct: 214 ELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELL 250
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 60.5 bits (140), Expect = 7e-10
Identities = 32/83 (38%), Positives = 45/83 (54%)
Frame = +3
Query: 189 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE 368
E +L + GF P+ IQ+ A+ GRD I AQ+G+GKT T+ + I I+
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSS 144
Query: 369 CQALILAPTRELAQQIQXVVDSL 437
QA+I+ PTREL Q+ V L
Sbjct: 145 VQAVIVVPTRELGMQVTKVARML 167
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 60.1 bits (139), Expect = 9e-10
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 4/96 (4%)
Frame = +3
Query: 165 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---SIS 335
TFD ++L E+ I GF+ + IQ +I P ++G+DV+ A++G+GKT F ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Query: 336 ILQQIDTSIRE-CQALILAPTRELAQQIQXVVDSLL 440
+L + S R +++ PTRELA Q + V + LL
Sbjct: 150 LLFKERFSPRNGTGVIVICPTRELAIQTKNVAEELL 185
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 60.1 bits (139), Expect = 9e-10
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 13/107 (12%)
Frame = +3
Query: 135 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 305
++T D V V TF +++L E L I + KP+ +Q+ AI ++GRD++A AQ+G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 306 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 416
+GKTA F I+ I D ++ + A+IL+PTRELA QI
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQI 253
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 59.7 bits (138), Expect = 1e-09
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = +3
Query: 165 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 335
TF+ L E+LR + + GF P+ IQ + +Q RD++A A++G+GKT + I
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI 495
Query: 336 ILQQIDTSIRE-CQALILAPTRELAQQIQ 419
+L+ R LILAPTRELA QIQ
Sbjct: 496 LLRHCRNDSRNGPTVLILAPTRELATQIQ 524
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 58.8 bits (136), Expect = 2e-09
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 10/91 (10%)
Frame = +3
Query: 177 MNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID- 353
++L + L + G IQ+ ++P +QGRD+IA+A++GTGKT F I I++++
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTE 166
Query: 354 -----TSIREC----QALILAPTRELAQQIQ 419
T+ R + L+LAPTRELA+Q++
Sbjct: 167 EAGDYTAFRRSGRLPKFLVLAPTRELAKQVE 197
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 58.8 bits (136), Expect = 2e-09
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Frame = +3
Query: 165 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 335
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 336 ILQQIDTSIRECQA-LILAPTRELAQQIQ 419
LQ+I R L+L+PTRELA QIQ
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQ 247
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 58.8 bits (136), Expect = 2e-09
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Frame = +3
Query: 165 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 335
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 336 ILQQIDTSIRECQA-LILAPTRELAQQIQ 419
LQ+I R L+L+PTRELA QIQ
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQ 247
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 58.8 bits (136), Expect = 2e-09
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Frame = +3
Query: 165 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSIS--- 335
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFL 218
Query: 336 ILQQIDTSIRECQA-LILAPTRELAQQIQ 419
LQ+I R L+L+PTRELA QIQ
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQ 247
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 58.8 bits (136), Expect = 2e-09
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 13/106 (12%)
Frame = +3
Query: 162 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 341
++F+++ L + LL + GF P+ +Q A+ I+G D + Q+ +G+GKT + + IL
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 342 QQI-------------DTSIRECQALILAPTRELAQQIQXVVDSLL 440
+I + E QA+I+AP+REL QI V+ LL
Sbjct: 170 SEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLL 215
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 58.4 bits (135), Expect = 3e-09
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Frame = +3
Query: 159 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 338
V TF L +LL + G++ P+ IQ +AI + G+ ++A A +G+GKTA+F + I
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 339 LQQIDT--------SIRECQALILAPTRELAQQIQ 419
+ + T R A++LAPTREL Q++
Sbjct: 169 ISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVE 203
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 56.8 bits (131), Expect = 8e-09
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 13/107 (12%)
Frame = +3
Query: 135 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 305
++T D V V TF +++L E L I + KP+ +Q+ AI GRD++A AQ+G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 306 TGKTATFSISILQQI--DTSIRECQ--------ALILAPTRELAQQI 416
+GKTA F I+ I D I + A+IL+PTRELA QI
Sbjct: 194 SGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQI 240
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 56.4 bits (130), Expect = 1e-08
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 8/162 (4%)
Frame = +3
Query: 33 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIY 212
SS+ E+ K S D P G T D+ + FD L L+ I
Sbjct: 341 SSDEDDENDEPLIKKAASAKAVQTDKPTGEHVKTSDSYLSKT--RFDQFPLSPLSLKAIK 398
Query: 213 AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRE 368
GFE + +Q+ + +QG+DV+A+A++GTGKT F + ++ + D+
Sbjct: 399 DAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPP 458
Query: 369 CQALILAPTRELAQQIQXVVDSLLVITLNAKCHACIGWHQCP 494
L++ PTRELA Q ++LL + IG + P
Sbjct: 459 IIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLP 500
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 55.2 bits (127), Expect = 2e-08
Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Frame = +3
Query: 144 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 323
D + V++F D+ + +L + GF +P+ IQ + ++GRD+I A++G+GKT +
Sbjct: 93 DIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLS 152
Query: 324 FSISILQQIDTSIRECQ-----ALILAPTRELAQQIQ 419
+ + + ++ L+LAPTRELA QIQ
Sbjct: 153 YLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQ 189
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 54.4 bits (125), Expect = 4e-08
Identities = 28/46 (60%), Positives = 33/46 (71%)
Frame = +3
Query: 279 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRELAQQI 416
DVI QA+SG GKTA F +S LQQI+ S + AL+L TRELA QI
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 47
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 54.4 bits (125), Expect = 4e-08
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Frame = +3
Query: 162 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 341
+TF ++ E++++ + F++P+ IQ A P I G+ I QSG+GKT + + ++
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 342 QQI--------DTSIREC-QALILAPTRELAQQI 416
Q++ S C + ++L PT ELA Q+
Sbjct: 434 QRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 54.0 bits (124), Expect = 6e-08
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Frame = +3
Query: 201 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI---SILQQIDTSIREC 371
R +Y+ GF PS IQ ++ +Q RD++A A++G+GKT + I LQ+I R
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMG 301
Query: 372 QA-LILAPTRELAQQIQ 419
L+L+PTRELA QIQ
Sbjct: 302 PTILVLSPTRELATQIQ 318
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 52.8 bits (121), Expect = 1e-07
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 347
FD L L+ I G+E + +Q+ + ++G+DV+A+A++GTGKT F + ++
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 348 I--------DTSIRECQALILAPTRELAQQIQXVVDSLL 440
+ D AL++ PTRELA Q ++LL
Sbjct: 116 VVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLL 154
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 52.8 bits (121), Expect = 1e-07
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 347
FD L L+GI GF+ + +Q+ + +QG+D++A+A++GTGKT F + ++
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 348 I--------DTSIRECQALILAPTRELAQQIQXVVDSLLVITLNAKCHACIGWHQCP 494
+ D L++ PTRELA Q + LL + IG + P
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLP 198
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 52.4 bits (120), Expect = 2e-07
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 10/96 (10%)
Frame = +3
Query: 159 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 338
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 339 LQQI--DTSIRECQ--------ALILAPTRELAQQI 416
+ I D + + A+IL+PTRELA QI
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 52.4 bits (120), Expect = 2e-07
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 10/96 (10%)
Frame = +3
Query: 159 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 338
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 339 LQQI--DTSIRECQ--------ALILAPTRELAQQI 416
+ I D + + A+IL+PTRELA QI
Sbjct: 210 ISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQI 245
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 52.4 bits (120), Expect = 2e-07
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Frame = +3
Query: 144 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 323
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLG 449
Query: 324 FSISILQQI-DTSIRECQ----ALILAPTRELAQQI 416
F + +L+ I D E L++APTREL QQI
Sbjct: 450 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 485
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 52.4 bits (120), Expect = 2e-07
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Frame = +3
Query: 219 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------AL 380
GFE P+ +Q +AI + GRDV+ A +GTGKT + ++ + + AL
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108
Query: 381 ILAPTRELAQQIQXVVDSLL 440
++ PTREL Q+ ++ LL
Sbjct: 109 VIVPTRELCLQVYETLEKLL 128
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 52.0 bits (119), Expect = 2e-07
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Frame = +3
Query: 153 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 332
++VE F ++ L EE++ + E P+ IQ I ++ + V+ + +G+GKT + +
Sbjct: 109 KLVENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLL 168
Query: 333 SILQQI---------DTSIRECQALILAPTRELAQQIQXVVDSL 437
I+Q + T R + ++L PTREL++Q+ V S+
Sbjct: 169 PIVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSI 212
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 52.0 bits (119), Expect = 2e-07
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +3
Query: 195 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID-TSIREC 371
+LR + GF++P+ IQ++AI + GR+ A A +G+GKT F +L ++ S
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGI 211
Query: 372 QALILAPTRELAQQ 413
+A+IL+P RELA Q
Sbjct: 212 RAVILSPARELAAQ 225
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 51.6 bits (118), Expect = 3e-07
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI----S 335
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + +
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 336 ILQQIDT-----SIRECQALILAPTRELAQQIQXVVDSLL 440
+L+ +++ + ALIL PTRELA QI +LL
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALL 429
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 51.6 bits (118), Expect = 3e-07
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Frame = +3
Query: 144 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 323
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 523 DVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLG 582
Query: 324 FSISILQQI-DTSIRECQ----ALILAPTRELAQQI 416
F + +L+ I D E L++APTREL QQI
Sbjct: 583 FVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQI 618
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 51.2 bits (117), Expect = 4e-07
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 10/142 (7%)
Frame = +3
Query: 33 SSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGT-LDTDWDQVVETFDDMNLKEELLRGI 209
S + + +D PE +G + + G ++ ++TF + NL E +L
Sbjct: 72 SEKNKKKDVPEKKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCC 131
Query: 210 YAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC------ 371
FEKPS IQ + GRD+I A++G+GKT F I + + ++
Sbjct: 132 KT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKK 189
Query: 372 ---QALILAPTRELAQQIQXVV 428
L+L+PTRELA QI V+
Sbjct: 190 VNPTCLVLSPTRELAVQISDVL 211
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 50.4 bits (115), Expect = 7e-07
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Frame = +3
Query: 3 RIRHEGNMSYSSERRSEDWPEDSK--NGPSKDQG----SYDGPPGMDPGTLDTDWDQVVE 164
R + E + E++ E + K N +K+Q S DG ++ + +
Sbjct: 131 RKKKEKKAKRNKEKKKEKKKKKQKKINEAAKNQDASAVSCDGDDTVEEQVEEEEIPPEFS 190
Query: 165 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI-MPCIQGRDVIAQAQSGTGKTATFSISIL 341
+ M L L++ IY F++P+ IQ+ + QG+DVI A++G+GKT F + IL
Sbjct: 191 AWSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPIL 250
Query: 342 QQI 350
Q++
Sbjct: 251 QRL 253
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 50.4 bits (115), Expect = 7e-07
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Frame = +3
Query: 168 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI----S 335
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + +
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 336 ILQQIDT-----SIRECQALILAPTRELAQQIQXVVDSLL 440
+L+ +++ + LIL PTRELA QI +LL
Sbjct: 437 VLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALL 476
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 49.6 bits (113), Expect = 1e-06
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Frame = +3
Query: 159 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 338
++ F DM LLR + G P+ IQ + + + GRD+I A +G+GKT F + +
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 339 L-----QQIDTSIRECQ---ALILAPTRELAQQIQXVVDSLL 440
+ ++I I + AL++ P+RELA+Q VV+ +
Sbjct: 156 IILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFV 197
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 48.4 bits (110), Expect = 3e-06
Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Frame = +3
Query: 60 PEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSA 239
P+DSK G S+D + GT+ + + V F + + ++ RG+ + +
Sbjct: 47 PKDSKIGKSEDGKN---------GTVFSRYAGV-RKFAQLPISDKTKRGLKDAKYVDMTD 96
Query: 240 IQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRELA 407
+Q AI + GRD++ A++G+GKT F I IL+++ + +I++PTRELA
Sbjct: 97 VQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELA 156
Query: 408 QQIQXVVDSL 437
Q V++ +
Sbjct: 157 AQTFGVLNKV 166
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 46.0 bits (104), Expect = 1e-05
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Frame = +3
Query: 159 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATF---- 326
++ F DM +L + G +P+ IQ + + + GRD+I A +G+GKT F
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 327 -SISILQQIDTSIRECQ---ALILAPTRELAQQIQXVVDSLLVITLNA 458
I++ +++ I + LI+ P+RELA+Q VV+ + + A
Sbjct: 205 IMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEA 252
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 45.6 bits (103), Expect = 2e-05
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Frame = +3
Query: 183 LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS- 359
L E+++ + GFE + +Q I +DV+ A +G+GKT F + ++ I S
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSN 82
Query: 360 -----IRECQALILAPTRELAQQIQXVVDSLLVITLNAKCHACIG 479
+ +I++PTREL+ QI V + + N +G
Sbjct: 83 SYPPKPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVG 127
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 45.2 bits (102), Expect = 3e-05
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Frame = +3
Query: 120 MDPGTLDTDWDQVVETFDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQ 293
MD +T ++ F ++ L E+++ + GFE + +Q I +DV+
Sbjct: 1 MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVD 60
Query: 294 AQSGTGKTATFSISILQQIDTS------IRECQALILAPTRELAQQIQXV 425
A +G+GKT F + ++ I S + +I++PTREL+ QI V
Sbjct: 61 AATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKV 110
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 44.4 bits (100), Expect = 5e-05
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +3
Query: 237 AIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRELAQQ 413
A+ I P RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR+LA Q
Sbjct: 50 AVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQ 109
Query: 414 IQXVVDSL 437
++ V D++
Sbjct: 110 VKDVFDAI 117
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Frame = +3
Query: 249 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTREL 404
+AI + G+ ++A A +G+GKTA+F + I+ + T R A++LAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 405 AQQIQ 419
Q++
Sbjct: 62 CVQVE 66
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 40.3 bits (90), Expect = 7e-04
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +3
Query: 138 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 317
DT + ++ + L + + + GF++PS Q I + G+DVI A++G+GKT
Sbjct: 72 DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKT 131
Query: 318 ATFSISILQQI 350
+ I+ Q+
Sbjct: 132 HGYLAPIIDQL 142
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 39.5 bits (88), Expect = 0.001
Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 10/142 (7%)
Frame = +3
Query: 39 ERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAY 218
+R++ + ++ K+ S ++ + ++ D V F + L + A
Sbjct: 58 KRKASEEEDEVKSDSSSEKKKSSKKVKLGVEDVEVDNPNAVSKF---RISAPLREKLKAN 114
Query: 219 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSI----------RE 368
G E IQ + G D++ +A++G GKT F + IL+ + R
Sbjct: 115 GIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRS 174
Query: 369 CQALILAPTRELAQQIQXVVDS 434
L+L PTRELA+Q+ D+
Sbjct: 175 PSVLVLLPTRELAKQVAADFDA 196
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 38.7 bits (86), Expect = 0.002
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Frame = +3
Query: 168 FDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 341
F D+ L +++ + FE + +Q I +DV A +G+GKT F + ++
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 342 QQIDTSI------RECQALILAPTRELAQQIQXVVDSLLVITLNAKCHACIG 479
+ + S + +I++PTREL+ QI V + N +G
Sbjct: 76 EILRRSTSFPPKPHQVMGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVG 127
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 32.7 bits (71), Expect = 0.15
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +3
Query: 78 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 251
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 252 AIMPCIQGR 278
+ P + GR
Sbjct: 141 EVDPRLVGR 149
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 28.7 bits (61), Expect = 2.4
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -1
Query: 284 NIASLDARHYCALLDCRRFFKTIGVYASQQFFFE 183
NI+ ++ + C+L+DC++ + + +A+Q F+
Sbjct: 373 NISEVEKKKVCSLMDCKKLSRDVYAHAAQNDRFQ 406
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 28.3 bits (60), Expect = 3.2
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +3
Query: 216 YGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPT 395
+G K A Q+ I + GRDV+ +G GK S+ Q+ +R L+++P
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGK------SLCYQLPAMLRGGTTLVVSPL 138
Query: 396 RELAQ 410
L Q
Sbjct: 139 LSLIQ 143
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +3
Query: 33 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 131
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 42 RRSEDWPEDSK---NGPSKDQGSYDGP 113
RR D P + +GPS+ +G YDGP
Sbjct: 265 RRGYDGPPQGRGGYDGPSQGRGGYDGP 291
>At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 180 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 272
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 180 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 272
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 363 RECQALILAPTRELAQQIQXVVDSLLVITLN 455
R C+ L P++ELA+Q++ +++ L L+
Sbjct: 5052 RRCELLTAKPSQELAEQLRLILEPTLASKLS 5082
>At3g46640.1 68416.m05063 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 323
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 500 LQRTLVPPNASMAFSIQGDHQEAI 429
L +L+PPN +MAFSI + I
Sbjct: 35 LSYSLIPPNLAMAFSITPERSRTI 58
>At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family
protein identical to probable vacuolar ATP synthase
subunit H (EC 3.6.3.14)(V-ATPase H subunit) (Vacuolar
proton pump H subunit) (Vacuolar proton pump subunit
SFD) SP:Q9LX65 from [Arabidopsis thaliana]; contains
Pfam PF03224: V-ATPase subunit H
Length = 441
Score = 26.6 bits (56), Expect = 9.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 72 WNPLANLLTFFQTNKTCFPRAEF 4
WNP+ F++ N TCF +F
Sbjct: 336 WNPMHKETNFWRENVTCFEENDF 358
>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 878
Score = 26.6 bits (56), Expect = 9.8
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +1
Query: 190 KNC*EAYTPMV--LKNLLQSSNAQ*CLASKDAMLSLKPSQELEKLLLSLYRFYNKSIQ 357
KN E T M+ + NL S + C++S A LSLK E K + Y + +Q
Sbjct: 325 KNLHEERTKMLGKMSNLQNKSKSVRCISSSQACLSLKDQLEKSKEAVFQYMALLEKLQ 382
>At2g14130.1 68415.m01574 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At1g32840, At4g04010,
At2g06430, At2g15140, At2g04980, At3g44500, At2g15190,
At3g47260, At5g34900, At3g29210, At2g02210, At3g32900
Length = 808
Score = 26.6 bits (56), Expect = 9.8
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +3
Query: 15 EGNMSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVE 164
EG + +E +E + EDS P+ GSY PG D T D+V E
Sbjct: 426 EGGLERKAENDNESF-EDSIREPNTQYGSY---PGDDENTQRDVGDEVAE 471
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,007,524
Number of Sequences: 28952
Number of extensions: 258622
Number of successful extensions: 888
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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