Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B04f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62892-1|AAC47284.1| 3351|Drosophila melanogaster retinoid- and ...    29   3.8  
AE014135-185|AAF59387.2| 3351|Drosophila melanogaster CG11064-PA...    29   3.8  

>U62892-1|AAC47284.1| 3351|Drosophila melanogaster retinoid- and fatty
            acid-bindingglycoprotein protein.
          Length = 3351

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 145  DELVGFYY*FLGAIVSK*RF*SVATTPLRFNTKVK*CDKR 26
            D  VGF Y F+G + SK    ++  T   FNTK   C+++
Sbjct: 2012 DREVGFSYTFMGNLGSKNGLGTLKITNKEFNTKFSVCEEK 2051


>AE014135-185|AAF59387.2| 3351|Drosophila melanogaster CG11064-PA
            protein.
          Length = 3351

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 145  DELVGFYY*FLGAIVSK*RF*SVATTPLRFNTKVK*CDKR 26
            D  VGF Y F+G + SK    ++  T   FNTK   C+++
Sbjct: 2012 DREVGFSYTFMGNLGSKNGLGTLKITNKEFNTKFSVCEEK 2051


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,004,208
Number of Sequences: 53049
Number of extensions: 285654
Number of successful extensions: 483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)