Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    29   2.7  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    29   2.7  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    29   2.7  
Z83105-7|CAB05491.1|  432|Caenorhabditis elegans Hypothetical pr...    27   6.2  
EU052683-1|ABU48856.1|  249|Caenorhabditis elegans heparan sulfa...    27   6.2  
EU052682-1|ABU48855.1|  278|Caenorhabditis elegans heparan sulfa...    27   6.2  
AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF098987-1|AAC67432.1|  276|Caenorhabditis elegans Heparan sulph...    27   6.2  

>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 271 SIRVTLFRNDLKSLLGNLEHYMRQSNNFVLLIDSI 167
           ++   +F + L+++L NL  +     NF LLID++
Sbjct: 178 NVYAAMFESTLRAILTNLPDFNSHEKNFELLIDTV 212


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 271 SIRVTLFRNDLKSLLGNLEHYMRQSNNFVLLIDSI 167
           ++   +F + L+++L NL  +     NF LLID++
Sbjct: 178 NVYAAMFESTLRAILTNLPDFNSHEKNFELLIDTV 212


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 271 SIRVTLFRNDLKSLLGNLEHYMRQSNNFVLLIDSI 167
           ++   +F + L+++L NL  +     NF LLID++
Sbjct: 178 NVYAAMFESTLRAILTNLPDFNSHEKNFELLIDTV 212


>Z83105-7|CAB05491.1|  432|Caenorhabditis elegans Hypothetical
           protein F14H3.7 protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -3

Query: 156 RCS*MSLLDSIINFLERSFRNKGFNQSPRLHFDSTLKLNNVIND 25
           RC   S++D + NF   SF    F+    L F++ LKL NV+ND
Sbjct: 255 RCDFNSIIDHLANF---SFITMEFSF---LTFENVLKLMNVLND 292


>EU052683-1|ABU48856.1|  249|Caenorhabditis elegans heparan sulfate
           3-O sulfotransferaseisoform b protein.
          Length = 249

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 44  NFSVESKWSRGD*LKPLFRNDRSKKLIIESNKLIYEHLHKPNRIYEQN 187
           N+++   W R     P   ND   +++IE     + + H P R+YE N
Sbjct: 89  NYTLGFDWYRDQ--MPEVENDN--EIVIEKTPAYFTNEHVPKRVYEMN 132


>EU052682-1|ABU48855.1|  278|Caenorhabditis elegans heparan sulfate
           3-O sulfotransferaseisoform a protein.
          Length = 278

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 44  NFSVESKWSRGD*LKPLFRNDRSKKLIIESNKLIYEHLHKPNRIYEQN 187
           N+++   W R     P   ND   +++IE     + + H P R+YE N
Sbjct: 89  NYTLGFDWYRDQ--MPEVENDN--EIVIEKTPAYFTNEHVPKRVYEMN 132


>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 22/86 (25%), Positives = 37/86 (43%)
 Frame = -3

Query: 267 SELLYLETILKVYSVI*NIT*DNQIISFCS*IRFGLCRCS*MSLLDSIINFLERSFRNKG 88
           S L+ LE IL++   +      NQ   F   +R  L      SL  +++  L  ++  K 
Sbjct: 60  STLMILEKILEIMGKVEEYESSNQPYIFLQFVRTALISTPFHSLAITVLERLCATYYIKD 119

Query: 87  FNQSPRLHFDSTLKLNNVINDI*TAC 10
           + ++PR     +L      + I TAC
Sbjct: 120 YERNPRFFIGFSLIGGLYASSILTAC 145


>AF098987-1|AAC67432.1|  276|Caenorhabditis elegans Heparan
           sulphotransferase protein 3 protein.
          Length = 276

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 44  NFSVESKWSRGD*LKPLFRNDRSKKLIIESNKLIYEHLHKPNRIYEQN 187
           N+++   W R     P   ND   +++IE     + + H P R+YE N
Sbjct: 89  NYTLGFDWYRDQ--MPEVENDN--EIVIEKTPAYFTNEHVPKRVYEMN 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,797,331
Number of Sequences: 27780
Number of extensions: 166693
Number of successful extensions: 365
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)