Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    29   0.56 
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    27   1.7  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   3.9  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    25   5.2  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   5.2  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.0  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    25   9.0  
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    25   9.0  

>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
 Frame = +1

Query: 271 FRGWNTSTDCLRHTLRSMLMNLPLSAYPNTSPILRLYW-RRLLN-VYKLTTS-CG--ELP 435
           F G++TSTDC R T  +  ++   S+  N+      Y    +LN ++KL+ S CG  +  
Sbjct: 174 FSGFHTSTDCKRPTCMTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLSKSLCGYSQQD 233

Query: 436 GHQF 447
           GH+F
Sbjct: 234 GHEF 237


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 23/104 (22%), Positives = 42/104 (40%)
 Frame = +1

Query: 61  INWYKHTMSTWSISLYSLELIRQRLQKNLKNHCNSK*N*PTFRYLWRNVVTQRVSTTL*P 240
           +NWY+ T  T ++S YS+E I +     +K            RY  +     R+  T+  
Sbjct: 254 LNWYQVTNPTETLSEYSVEDIPESELNEMKLRHRK-------RYETKKATFNRLKNTIDD 306

Query: 241 LLNFNRNSPRFRGWNTSTDCLRHTLRSMLMNLPLSAYPNTSPIL 372
             + N ++      +T    L+H L  + ++ P   Y     +L
Sbjct: 307 FESGNYDALFILSIHTPMSVLQHLLPKLGISRPFMVYSTYQQVL 350


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 207 RNATSLYNPMTIAELQQKFPKVPWLEYINRLL 302
           ++   + + + IA LQQ+FP   W+   +RL+
Sbjct: 691 KSTPEMRHKLRIAALQQRFPVDEWVALYDRLI 722


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 304 RHTLRSMLMNLPLSAYPNTSPILRLYWRRLLNVYK 408
           RHTL   L N  L      SP    +W+RLL V+K
Sbjct: 203 RHTLIHDLPNTCLRFKKILSPRNVSFWKRLLKVHK 237


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 21  LGLSREYLNRGFSDKLVQAYYEYMVDIAILLGADKTKATEELK 149
           +GL+R+YLN G  DK ++   + +   A   G D  K  E+ K
Sbjct: 12  IGLARKYLNAGEYDKALKFANKSLRIHATTEGEDFVKQIEKQK 54


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +3

Query: 171 KLANISLPL----EKRRNATSLYNPMTIAELQQK 260
           K  N++LP     +KR+N +S+ N   IAE++ K
Sbjct: 467 KRFNVALPYGQEKQKRKNISSIENVPIIAEIENK 500


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 48  RGFSDKLVQAYYEYMVDIAILLGADKTKATEELKESLQFEM 170
           +G SDK ++A Y  M+ +A     DKT    +++   Q E+
Sbjct: 258 KGLSDKFLRAPYGRMLIVAGTDRLDKTLTIGQMQGKYQLEI 298


>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 359 VFGYADNGKFINIDRNVWRKQSVDVFQPRNLGEFLLKFS 243
           V GY    K    D NV    ++ ++Q R  G FL+ FS
Sbjct: 222 VIGYFSKEKRSASDYNVSCILTLPIYQRRGYGVFLIDFS 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,925
Number of Sequences: 5004
Number of extensions: 41949
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)