Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.36 
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   3.3  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   3.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   5.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   5.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   5.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 194 SGETS*RNESLQPYDHC*TSTEIPQGSVVGIHQQTAC 304
           SG T+ +  ++ PYDH   ++ +P  S+ G  QQ  C
Sbjct: 455 SGTTTLQTRTMHPYDHLVWNSWMP--SIRGAIQQWTC 489


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 57  SDKLVQAYYEYMVDIAILLGADKTKATEELKESLQFEMK 173
           +D+L   YY+  +D    L  D       + E+ Q + K
Sbjct: 38  NDRLRNQYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCK 76


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +3

Query: 57  SDKLVQAYYEYMVDIAILLGADKTKATEELKESLQFEMK 173
           +D+L   YY+  +D    L  D       + E+ Q + K
Sbjct: 38  NDRLRNQYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCK 76


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 109 SLELIRQRLQKNLKNHCNSK*N 174
           +L L R  L+K   ++CNSK N
Sbjct: 203 NLHLPRFTLEKFFTDYCNSKTN 224


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 109 SLELIRQRLQKNLKNHCNSK*N 174
           +L L R  L+K   ++CNSK N
Sbjct: 203 NLHLPRFTLEKFFTDYCNSKTN 224


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/37 (21%), Positives = 19/37 (51%)
 Frame = -1

Query: 359 VFGYADNGKFINIDRNVWRKQSVDVFQPRNLGEFLLK 249
           + GY  N +   +   ++++ S+     RN+G F+ +
Sbjct: 211 IIGYETNDRKEKLATGIYQRLSLSFKLQRNIGYFVFQ 247


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 85  STWSISLYSLELIRQRLQKNLKNH 156
           ++W+   Y LEL +Q  Q ++ N+
Sbjct: 150 ASWTYDGYQLELEKQSEQGDVSNY 173


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 276 WLEYINRLLAPHITVDVN 329
           WL Y N LL P I   +N
Sbjct: 414 WLGYCNSLLNPIIYATLN 431


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,081
Number of Sequences: 438
Number of extensions: 2889
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)