Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65920.1 68414.m07480 regulator of chromosome condensation (R...    29   2.5  
At5g54410.1 68418.m06777 hypothetical protein                          28   3.3  
At1g09400.1 68414.m01051 12-oxophytodienoate reductase, putative...    28   3.3  
At1g31850.3 68414.m03915 dehydration-responsive protein, putativ...    27   7.7  
At1g31850.2 68414.m03914 dehydration-responsive protein, putativ...    27   7.7  
At1g31850.1 68414.m03913 dehydration-responsive protein, putativ...    27   7.7  

>At1g65920.1 68414.m07480 regulator of chromosome condensation (RCC1)
            family protein / zinc finger protein-related contains
            Pfam profiles: regulator of chromosome condensation
            (RCC1), PF01363 FYVE zinc finger
          Length = 1006

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 20/101 (19%), Positives = 47/101 (46%)
 Frame = +3

Query: 117  ADKTKATEELKESLQFEMKLANISLPLEKRRNATSLYNPMTIAELQQKFPKVPWLEYINR 296
            A+K+KA +E+ ++L  +++ AN   P    +   +  NP  ++ +      +P+L  I  
Sbjct: 841  AEKSKAAKEIIKALASKLQ-ANKEKPSNPLKTGIAC-NPSQVSPIFDDSMSIPYLTPITT 898

Query: 297  LLAPHITVDVNELTIVSVPKYITDLEALLEKTPKRVQANYV 419
              + H T    E  +       ++++ L++ +P   +  Y+
Sbjct: 899  ARSQHETKQHVEKCVTKSSNRDSNIKLLVDASPAITRTGYL 939


>At5g54410.1 68418.m06777 hypothetical protein 
          Length = 219

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 19/80 (23%), Positives = 35/80 (43%)
 Frame = +3

Query: 21  LGLSREYLNRGFSDKLVQAYYEYMVDIAILLGADKTKATEELKESLQFEMKLANISLPLE 200
           LGL +   N    DK+VQA  E +      L  +  ++ EE  ++++   +  N    LE
Sbjct: 12  LGLGKHPSNSSADDKIVQALAEAIDAANKKLREETLQSNEEANDAMETFRRKTNEQKRLE 71

Query: 201 KRRNATSLYNPMTIAELQQK 260
             +   +L +   + +L  K
Sbjct: 72  NEKRKQALKDAKDLKDLTYK 91


>At1g09400.1 68414.m01051 12-oxophytodienoate reductase, putative
           similar to OPR1 [GI:3882355] and OPR2 [GI:3882356]
          Length = 324

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = -1

Query: 434 GNSPHDVVSLYTFRSLLQ*SLKIGDVFGYADNGKFINIDRNVWRKQSVDVFQP 276
           GN P   V+LY  +      L I +  G ++          +WRK+ ++ ++P
Sbjct: 22  GNIPQPHVALYYCQRTTPGGLLISEATGVSETAMAYQNMPGIWRKEQIEAWKP 74


>At1g31850.3 68414.m03915 dehydration-responsive protein, putative
           strong similarity to early-responsive to dehydration
           stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
           contains Pfam profile PF03141: Putative
           methyltransferase
          Length = 603

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 238 PLLNFNRNSPRFRGWNTSTDCLR---HTLRSMLMNLPLSAYPNTSPILRLYWRRL 393
           P +N+NR   R+RGWNT+ +  +   + L+S+L ++    Y     I    W++L
Sbjct: 301 PPVNYNR---RWRGWNTTMEDQKSDYNKLQSLLTSMCFKKYAQKDDI--AVWQKL 350


>At1g31850.2 68414.m03914 dehydration-responsive protein, putative
           strong similarity to early-responsive to dehydration
           stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
           contains Pfam profile PF03141: Putative
           methyltransferase
          Length = 603

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 238 PLLNFNRNSPRFRGWNTSTDCLR---HTLRSMLMNLPLSAYPNTSPILRLYWRRL 393
           P +N+NR   R+RGWNT+ +  +   + L+S+L ++    Y     I    W++L
Sbjct: 301 PPVNYNR---RWRGWNTTMEDQKSDYNKLQSLLTSMCFKKYAQKDDI--AVWQKL 350


>At1g31850.1 68414.m03913 dehydration-responsive protein, putative
           strong similarity to early-responsive to dehydration
           stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
           contains Pfam profile PF03141: Putative
           methyltransferase
          Length = 603

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 238 PLLNFNRNSPRFRGWNTSTDCLR---HTLRSMLMNLPLSAYPNTSPILRLYWRRL 393
           P +N+NR   R+RGWNT+ +  +   + L+S+L ++    Y     I    W++L
Sbjct: 301 PPVNYNR---RWRGWNTTMEDQKSDYNKLQSLLTSMCFKKYAQKDDI--AVWQKL 350


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,028,358
Number of Sequences: 28952
Number of extensions: 215930
Number of successful extensions: 505
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)