Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303B01f
(521 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5K671 Cluster: Reverse transcriptase; n=2; Bombyx mori... 299 3e-80
UniRef50_O44320 Cluster: Reverse transcriptase; n=1; Hippodamia ... 102 4e-21
UniRef50_Q49P02 Cluster: Reverse transcriptase-like protein; n=1... 86 5e-16
UniRef50_Q03278 Cluster: Retrovirus-related Pol polyprotein from... 83 3e-15
UniRef50_Q49P04 Cluster: Reverse transcriptase-like protein; n=2... 83 5e-15
UniRef50_Q76IP1 Cluster: Reverse transcriptase; n=1; Ciona intes... 77 2e-13
UniRef50_P16423 Cluster: Retrovirus-related Pol polyprotein from... 76 4e-13
UniRef50_Q3C2G7 Cluster: Reverse transcriptase; n=1; Metacrinus ... 75 1e-12
UniRef50_Q3C2H3 Cluster: Reverse transcriptase; n=1; Eptatretus ... 74 2e-12
UniRef50_O44319 Cluster: Reverse transcriptase; n=1; Anurida mar... 71 1e-11
UniRef50_O44323 Cluster: Reverse transcriptase; n=1; Forficula a... 71 2e-11
UniRef50_Q3C2G5 Cluster: Reverse transcriptase; n=1; Procambarus... 70 3e-11
UniRef50_Q76IP0 Cluster: Reverse transcriptase; n=1; Ciona intes... 62 1e-08
UniRef50_Q76IN9 Cluster: Reverse transcriptase; n=1; Ciona intes... 56 4e-07
UniRef50_Q03279 Cluster: Retrovirus-related Pol polyprotein from... 51 1e-05
UniRef50_Q03275 Cluster: Retrovirus-related Pol polyprotein from... 49 6e-05
UniRef50_Q4QQD8 Cluster: Polyprotein; n=1; Schistosoma mansoni|R... 49 7e-05
UniRef50_Q03274 Cluster: Retrovirus-related Pol polyprotein from... 46 4e-04
UniRef50_UPI0000D57891 Cluster: PREDICTED: similar to Hypothetic... 44 0.003
UniRef50_O44321 Cluster: Reverse transcriptase; n=1; Tenebrio mo... 37 0.32
UniRef50_Q3C2H0 Cluster: Reverse transcriptase; n=3; Mauremys re... 34 1.7
UniRef50_UPI0000DD7A64 Cluster: PREDICTED: hypothetical protein;... 33 5.2
UniRef50_UPI00005A0587 Cluster: PREDICTED: similar to Stromal in... 33 5.2
UniRef50_O44324 Cluster: Reverse transcriptase; n=1; Tenebrio mo... 33 5.2
UniRef50_Q2G3A6 Cluster: Putative uncharacterized protein; n=1; ... 32 6.9
UniRef50_Q841M4 Cluster: Putative secreted peptidase; n=1; Strep... 32 6.9
UniRef50_UPI00015B4F89 Cluster: PREDICTED: similar to zinc finge... 32 9.2
UniRef50_Q4SL46 Cluster: Chromosome 17 SCAF14563, whole genome s... 32 9.2
UniRef50_Q8SVH7 Cluster: Putative uncharacterized protein ECU05_... 32 9.2
>UniRef50_Q5K671 Cluster: Reverse transcriptase; n=2; Bombyx mori|Rep:
Reverse transcriptase - Bombyx mori (Silk moth)
Length = 1114
Score = 299 bits (733), Expect = 3e-80
Identities = 143/159 (89%), Positives = 143/159 (89%)
Frame = -2
Query: 520 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKK 341
RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPW VARAAAKSDKIRKK
Sbjct: 779 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKK 838
Query: 340 LRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQI 161
LRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQI
Sbjct: 839 LRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQI 898
Query: 160 TGRDFVQFVHTHINALPXXXXXXXXXXXXXXXSLTCRAG 44
TGRDFVQFVHTHINALP SLTCRAG
Sbjct: 899 TGRDFVQFVHTHINALPSRIRGSRGRRGGGESSLTCRAG 937
>UniRef50_O44320 Cluster: Reverse transcriptase; n=1; Hippodamia
convergens|Rep: Reverse transcriptase - Hippodamia
convergens (Convergent lady beetle)
Length = 493
Score = 102 bits (245), Expect = 4e-21
Identities = 58/138 (42%), Positives = 77/138 (55%), Gaps = 1/138 (0%)
Frame = -2
Query: 520 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKK 341
RLP DVP Y+HA GGL IP + IP L ++RF L S R A+++ K
Sbjct: 156 RLPHDVPVGYFHAPTNAGGLGIPQLSRFIPLLRLKRFERLAHSSVESVRECARTEPAVAK 215
Query: 340 LRWAWKQLRRF-SRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQ 164
+RW ++L RV TQ S+R FW L+ S+DGR LRES R ST+W+R
Sbjct: 216 VRWCRERLADVVDRVADGTQ--SLREFWTRELYRSMDGRALRESVRETPSTQWLRCCTRV 273
Query: 163 ITGRDFVQFVHTHINALP 110
I RD++ ++ HINALP
Sbjct: 274 IPARDWLNYISVHINALP 291
>UniRef50_Q49P02 Cluster: Reverse transcriptase-like protein; n=1;
Ixodes scapularis|Rep: Reverse transcriptase-like
protein - Ixodes scapularis (Black-legged tick) (Deer
tick)
Length = 513
Score = 85.8 bits (203), Expect = 5e-16
Identities = 50/136 (36%), Positives = 70/136 (51%)
Frame = -2
Query: 517 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKKL 338
LP D P YYHA V +GGL + S IP + V+R + +S + R AA + ++ L
Sbjct: 188 LPHDTPLGYYHAPVAEGGLGVGSFSTAIPWMQVQRLPRMATSSSPICRQAADTYMVKTAL 247
Query: 337 RWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQIT 158
A K R + + + SV W LHAS DG LRE R+P + +W++E +T
Sbjct: 248 DRAKKAC--VVRGNILSDKQSVGKHWSALLHASNDGHALREVGRSPAAQRWVQEGTGLLT 305
Query: 157 GRDFVQFVHTHINALP 110
GR F+ INALP
Sbjct: 306 GRAFIDVNKLRINALP 321
>UniRef50_Q03278 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R2 (Retrovirus-related
Pol polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease]; n=1; Nasonia vitripennis|Rep:
Retrovirus-related Pol polyprotein from type-1
retrotransposable element R2 (Retrovirus-related Pol
polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease] - Nasonia vitripennis (Parasitic wasp)
Length = 1025
Score = 83.4 bits (197), Expect = 3e-15
Identities = 44/137 (32%), Positives = 71/137 (51%)
Frame = -2
Query: 520 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKK 341
RLP D P Y+HA +++GGL IP+ + IP+L+ R L +S AR+ D + ++
Sbjct: 706 RLPHDTPIGYFHAPIKEGGLGIPAFESRIPELLKSRIEALGASNMQTARSLLGGDWVAER 765
Query: 340 LRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQI 161
+W Q + S W + LH + DG++LR++ + S WIR+ I
Sbjct: 766 KKWINTQKIKNSE-------------WAQKLHLTTDGKDLRDTRKAEASYSWIRDIHVAI 812
Query: 160 TGRDFVQFVHTHINALP 110
++++ HT INALP
Sbjct: 813 PASVWIKYHHTRINALP 829
>UniRef50_Q49P04 Cluster: Reverse transcriptase-like protein; n=2;
Ixodidae|Rep: Reverse transcriptase-like protein -
Amblyomma americanum (lone star tick)
Length = 510
Score = 82.6 bits (195), Expect = 5e-15
Identities = 47/136 (34%), Positives = 67/136 (49%)
Frame = -2
Query: 517 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKKL 338
LP DVP +++A ++ GGL I +R TIP L +RRF + S AA + +
Sbjct: 189 LPLDVPMGFFYAQIEQGGLGINCLRTTIPSLRLRRFAKMTHSSNSACTFAATRRTVTDSI 248
Query: 337 RWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQIT 158
A ++L F + S R FW LHAS DGR L+ ST W+RE + +
Sbjct: 249 HQA-ERLCVFKGQTLRNPKESGR-FWSSQLHASSDGRSLQGCKNAKGSTYWLREGTSFLK 306
Query: 157 GRDFVQFVHTHINALP 110
GR+F+ H A+P
Sbjct: 307 GREFIDLTKFHTGAMP 322
>UniRef50_Q76IP1 Cluster: Reverse transcriptase; n=1; Ciona
intestinalis|Rep: Reverse transcriptase - Ciona
intestinalis (Transparent sea squirt)
Length = 998
Score = 77.4 bits (182), Expect = 2e-13
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Frame = -2
Query: 520 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKK 341
RLP D PKAY+HA DGGL +P ++ IP R+ + S V +AA + +K
Sbjct: 673 RLPKDTPKAYFHAKCNDGGLGVPELQRVIPLQKAGRWLKMTRSQDPVVQAAVGLEYFQKL 732
Query: 340 L-RWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQ 164
L RW+ +L ++ TT + + L++SV+GR LR+S T W+R C+
Sbjct: 733 LERWSTPELYQWGGGGITTS-GHLAVAQARSLYSSVNGRGLRQSGLVSTQFDWVRSGCSL 791
Query: 163 ITGRDFVQFVHTHINAL 113
++GR+F+ + N L
Sbjct: 792 LSGRNFIGAMQLRGNLL 808
>UniRef50_P16423 Cluster: Retrovirus-related Pol polyprotein from
type-2 retrotransposable element R2DM (Retrovirus-related
Pol polyprotein from type II retrotransposable element
R2DM) [Includes: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]; n=26;
Drosophila|Rep: Retrovirus-related Pol polyprotein from
type-2 retrotransposable element R2DM (Retrovirus-related
Pol polyprotein from type II retrotransposable element
R2DM) [Includes: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease] - Drosophila
melanogaster (Fruit fly)
Length = 1057
Score = 76.2 bits (179), Expect = 4e-13
Identities = 45/136 (33%), Positives = 66/136 (48%)
Frame = -2
Query: 517 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKKL 338
LP DVP A+ HA + GGL IPS+R P L +RR + P L A S +K
Sbjct: 734 LPLDVPIAFVHAPPKSGGLGIPSLRWVAPMLRLRRLSNI-KWPHLTQNEVASSFLEAEKQ 792
Query: 337 RWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQIT 158
R + R + + RP++ +W L+ SVDG LRE W+ + +T
Sbjct: 793 R---ARDRLLAEQNELLSRPAIEKYWANKLYLSVDGSGLREGGHYGPQHGWVSQPTRLLT 849
Query: 157 GRDFVQFVHTHINALP 110
G++++ + INALP
Sbjct: 850 GKEYMDGIRLRINALP 865
>UniRef50_Q3C2G7 Cluster: Reverse transcriptase; n=1; Metacrinus
rotundus|Rep: Reverse transcriptase - Metacrinus
rotundus
Length = 492
Score = 74.5 bits (175), Expect = 1e-12
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Frame = -2
Query: 520 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKI-RK 344
+LP D P A+ HA +DGGL+I S+ TIP L +RFG L S AA +++ R
Sbjct: 160 KLPHDTPNAFLHANYKDGGLSIDSLSLTIPFLKGKRFGKLTVSSDDTVLAATETNSFKRM 219
Query: 343 KLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQ 164
+W Q++ + ++S + ++R + LH ++DG LR ++ +WI + C
Sbjct: 220 HKKWREAQVKEGALMNS---KAAIRRGFAAQLHGTLDGAGLRSMPQSGHIQRWITDPCPP 276
Query: 163 ITGRDFVQFVHTHINAL 113
GR+F V NAL
Sbjct: 277 CNGRNFTGRVKVRANAL 293
>UniRef50_Q3C2H3 Cluster: Reverse transcriptase; n=1; Eptatretus
burgeri|Rep: Reverse transcriptase - Eptatretus burgeri
(Inshore hagfish)
Length = 486
Score = 74.1 bits (174), Expect = 2e-12
Identities = 50/144 (34%), Positives = 68/144 (47%), Gaps = 7/144 (4%)
Frame = -2
Query: 520 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKS---DKI 350
RLP D P AY+HA DGGL +P TIP L RR GL+ S RA ++ D +
Sbjct: 158 RLPKDTPVAYFHARSADGGLGLPQFSVTIPILRERRMRGLEQSDSPYVRAVIRTKLGDVV 217
Query: 349 RKK----LRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWI 182
R + L + ++ R + D T + LH +VDGR L E++R P W+
Sbjct: 218 RSRNTYNLHYGGERPRSIKQADVITAK---------LLHQAVDGRGLLEASRVPEPNDWV 268
Query: 181 RERCAQITGRDFVQFVHTHINALP 110
R +GR F+ V N LP
Sbjct: 269 LGRSRLQSGRAFIDSVKVRGNLLP 292
>UniRef50_O44319 Cluster: Reverse transcriptase; n=1; Anurida
maritima|Rep: Reverse transcriptase - Anurida maritima
Length = 1151
Score = 71.3 bits (167), Expect = 1e-11
Identities = 42/136 (30%), Positives = 68/136 (50%)
Frame = -2
Query: 517 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKKL 338
LP VP A+++A + +GGL + +R +IP ++ RF + +S RAAAK ++
Sbjct: 821 LPQSVPSAFFYAPIGEGGLGLMELRTSIPAMVKARFERMMNSTCHHVRAAAKGAANSNRI 880
Query: 337 RWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQIT 158
A + LR+ + T V+ + LH S DG+ L E+ R W + +T
Sbjct: 881 ALANRFLRKTADGIPVTSAKLVKEYQAAKLHGSFDGKPLSEAGRVKGIHSWTCDGRMVMT 940
Query: 157 GRDFVQFVHTHINALP 110
G+ F + + INALP
Sbjct: 941 GQAFCEALKIRINALP 956
>UniRef50_O44323 Cluster: Reverse transcriptase; n=1; Forficula
auricularia|Rep: Reverse transcriptase - Forficula
auricularia (European earwig)
Length = 1033
Score = 70.5 bits (165), Expect = 2e-11
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
Frame = -2
Query: 517 LPADVPKAYYHAAVQDGGLAIPSVRATIP---DLIVRRFGGLDSSPWLVARAAAKSDKIR 347
LP D P AY+HA+ +DGGL +PS+R IP L + R+ G + ++ R
Sbjct: 709 LPKDTPNAYFHASSRDGGLGLPSMRWLIPLHRYLRLLRYEGRNPED---TNVYLTTEINR 765
Query: 346 KKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCA 167
K+R + S +D + + FW + L+ SVDG L ES++ P +W
Sbjct: 766 AKIRLS----DNGSNIDCQAK---LWQFWADRLYKSVDGSALIESSKVPQQHRWATGGSR 818
Query: 166 QITGRDFVQFVHTHINALP 110
+TGRDF+ + IN LP
Sbjct: 819 FLTGRDFINSIKLRINTLP 837
>UniRef50_Q3C2G5 Cluster: Reverse transcriptase; n=1; Procambarus
clarkii|Rep: Reverse transcriptase - Procambarus clarkii
(Red swamp crayfish)
Length = 480
Score = 70.1 bits (164), Expect = 3e-11
Identities = 45/136 (33%), Positives = 61/136 (44%)
Frame = -2
Query: 520 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKK 341
RLP D P A+ HA V+DGGL IP +I +R G L S V AAA + +
Sbjct: 158 RLPHDTPNAFIHADVKDGGLGIPDFATSIRLQKNKRLGALTGSADPVVVAAALLPAFQAR 217
Query: 340 LRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQI 161
+R W + S+ R WR L++ VDG L S P+ KW+ +
Sbjct: 218 MR-RWVDPATAAGTPSSRTTECARR-WRAKLYSMVDGAGLASSCEVPSCHKWVASGTRLL 275
Query: 160 TGRDFVQFVHTHINAL 113
+G DF V NA+
Sbjct: 276 SGGDFAHAVQIRANAV 291
>UniRef50_Q76IP0 Cluster: Reverse transcriptase; n=1; Ciona
intestinalis|Rep: Reverse transcriptase - Ciona
intestinalis (Transparent sea squirt)
Length = 1104
Score = 61.7 bits (143), Expect = 1e-08
Identities = 42/136 (30%), Positives = 58/136 (42%)
Frame = -2
Query: 517 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKKL 338
LP D P A+YHA DGGL I + TIP L R L S V K L
Sbjct: 778 LPKDTPTAFYHAKACDGGLGITRLEHTIPILKRNRMMKLTLSEDPVIMELVKLTYFTNLL 837
Query: 337 RWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQIT 158
+ ++ + T + S+ LH SVDGR L + P + W+ + ++
Sbjct: 838 H-KYSNVKLLNSWP-VTDKDSLARAEASMLHTSVDGRGLSNCSDVPRQSDWVTNGASLLS 895
Query: 157 GRDFVQFVHTHINALP 110
GRDF+ + N LP
Sbjct: 896 GRDFIGAIKVRGNLLP 911
>UniRef50_Q76IN9 Cluster: Reverse transcriptase; n=1; Ciona
intestinalis|Rep: Reverse transcriptase - Ciona
intestinalis (Transparent sea squirt)
Length = 779
Score = 56.4 bits (130), Expect = 4e-07
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Frame = -2
Query: 520 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSS--PWLVARAAAKSDKIR 347
+LP D P Y ++ +DGGL +P + + +P L +RR ++S P VA + +
Sbjct: 484 KLPKDTPLGYLYSDYKDGGLGVPRLLSRVPLLRIRRMAKYNTSEDPTTVALRSCHT-FTS 542
Query: 346 KKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCA 167
++WA + S V + +R R F R L S+DG L + TP + +W+
Sbjct: 543 AAVKWAMPP--KISNVVISDKRKE-RDFHRSELATSIDGSGLSCANTTPRAHQWVVNGTG 599
Query: 166 QITGRDFVQFVHTHINAL 113
++G++++ ++ N L
Sbjct: 600 LLSGKNYIGAINARGNLL 617
>UniRef50_Q03279 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R2 (Retrovirus-related
Pol polyprotein from type I retrotransposable element
R2) [Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease]; n=1; Bradysia coprophila|Rep:
Retrovirus-related Pol polyprotein from type-1
retrotransposable element R2 (Retrovirus-related Pol
polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease] - Sciara coprophila (Fungus gnat)
Length = 869
Score = 51.2 bits (117), Expect = 1e-05
Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Frame = -2
Query: 520 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVAR--AAAKSDKIR 347
RLP DVP A+ +A V+ GG IP ++ IP + RF L+ + AA + ++
Sbjct: 546 RLPGDVPVAFLYAPVKAGGKGIPCLKQWIP---LMRFLRLNKAKRTGGDRIAAVLNCQLY 602
Query: 346 KKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCA 167
+ + K + +T + +WR L VDG++L+ + ++T + R
Sbjct: 603 ASISHSCKTGPVSVGLWRSTNTGGLSAYWRRILIGMVDGKDLKSAQNHSSATSFNSIRMN 662
Query: 166 QITGRDFVQFVHTHINALP 110
I+G D++ + N++P
Sbjct: 663 DISGEDYIHYNQLRTNSIP 681
>UniRef50_Q03275 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R2 (Retrovirus-related
Pol polyprotein from type I retrotransposable element
R2) [Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease]; n=1; Popillia japonica|Rep:
Retrovirus-related Pol polyprotein from type-1
retrotransposable element R2 (Retrovirus-related Pol
polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease] - Popillia japonica (Japanese beetle)
Length = 482
Score = 49.2 bits (112), Expect = 6e-05
Identities = 34/131 (25%), Positives = 60/131 (45%)
Frame = -2
Query: 502 PKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKKLRWAWK 323
P AY HA +++GGL I S+RA IP ++ R + ++ + + + K ++
Sbjct: 162 PDAYIHAPIREGGLGIISLRAHIPAIMRSRLFKIATTADPLTATVLQIPAVEK----FYQ 217
Query: 322 QLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQITGRDFV 143
L R++ + + ++R W L S G LR+ + S W+R +G D++
Sbjct: 218 TLLRWTEGNGGS-TTNIRKEWGRKLQESYSGNGLRQGNTSGVSGDWLRNPPNFWSGADYI 276
Query: 142 QFVHTHINALP 110
V N LP
Sbjct: 277 DAVRLRGNLLP 287
>UniRef50_Q4QQD8 Cluster: Polyprotein; n=1; Schistosoma mansoni|Rep:
Polyprotein - Schistosoma mansoni (Blood fluke)
Length = 1144
Score = 48.8 bits (111), Expect = 7e-05
Identities = 34/114 (29%), Positives = 52/114 (45%)
Frame = -2
Query: 520 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKK 341
RLP+D P AY+H+ V GGL I + +++P +R L SSP + S +
Sbjct: 823 RLPSDTPLAYFHSPVAAGGLGILHLSSSVPFHRRKRLETLLSSPNRLLHKLPTSPTLASY 882
Query: 340 LRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIR 179
+ QL ++ T R W LH+S DG+ L + + S W+R
Sbjct: 883 SHLS--QLPVRIGHETVTSREEASNSWVRRLHSSCDGKGLLLAPLSTESHAWLR 934
>UniRef50_Q03274 Cluster: Retrovirus-related Pol polyprotein from
type-1 retrotransposable element R2 (Retrovirus-related
Pol polyprotein from type I retrotransposable element
R2) [Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease]; n=1; Popillia japonica|Rep:
Retrovirus-related Pol polyprotein from type-1
retrotransposable element R2 (Retrovirus-related Pol
polyprotein from type I retrotransposable element R2)
[Includes: Reverse transcriptase (EC 2.7.7.49);
Endonuclease] - Popillia japonica (Japanese beetle)
Length = 711
Score = 46.4 bits (105), Expect = 4e-04
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Frame = -2
Query: 502 PKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSS-PWLVARAAAKS-DKIRKKLRWA 329
P ++A V+DGGL + +R +IP +++ R SS P VA + S D +R +L
Sbjct: 401 PNQCFYARVRDGGLGLTDLRRSIPRIMLDRINARRSSDPMAVALFSCPSFDHLRGRL--- 457
Query: 328 WKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQITGRD 149
V P FWRE + + L ++ P S WI + +G+D
Sbjct: 458 ---------VALAGDVPPSH-FWREAIANHTTTKGLEAASDDPASRSWIFRKPYGWSGKD 507
Query: 148 FVQFVHTHINALP 110
FV+ +H LP
Sbjct: 508 FVRAIHLRTGNLP 520
>UniRef50_UPI0000D57891 Cluster: PREDICTED: similar to Hypothetical
115 kDa protein in type I retrotransposable element R1DM
(ORF 2), partial; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to Hypothetical 115 kDa protein in
type I retrotransposable element R1DM (ORF 2), partial -
Tribolium castaneum
Length = 2033
Score = 43.6 bits (98), Expect = 0.003
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Frame = -2
Query: 517 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGL-DSSPWLVARAAAKSDKIRKK 341
L P + HA+V DGGL I +R IP + + R L + + + +S+++R
Sbjct: 1899 LNVHTPDSLIHASVSDGGLGIMELRKAIPRIFLGRLVKLLNKNKNSYLSSVLQSNRVRTL 1958
Query: 340 LRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQI 161
+ K V +T FWR + + + L + + S WI E+ +
Sbjct: 1959 MG---KLSTMAGEVPEST-------FWRNQIASGPLSKSLEQRAKDSASRLWISEKPSGW 2008
Query: 160 TGRDFVQFVHTHINALP 110
+GRD V+ V LP
Sbjct: 2009 SGRDHVRAVQLRTGNLP 2025
>UniRef50_O44321 Cluster: Reverse transcriptase; n=1; Tenebrio
molitor|Rep: Reverse transcriptase - Tenebrio molitor
(Yellow mealworm)
Length = 469
Score = 36.7 bits (81), Expect = 0.32
Identities = 38/138 (27%), Positives = 55/138 (39%), Gaps = 3/138 (2%)
Frame = -2
Query: 517 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLD---SSPWLVARAAAKSDKIR 347
LP + +A + GGL + S IP ++++R L S+ LV R AA
Sbjct: 157 LPLHLSNTAIYAPAKMGGLGMFSFSRKIPIIVLKRLNNLSRTCSNFHLVLREAAP----- 211
Query: 346 KKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCA 167
W +L++ R D TT+ R EH S G + S WI
Sbjct: 212 ----WV-NRLKKMVRPDVTTKEQVDRANGVEH-EGSYYGGGTMQCRNDSASNTWINTPPR 265
Query: 166 QITGRDFVQFVHTHINAL 113
TG D+V+ V +N L
Sbjct: 266 YWTGSDYVKAVQLRLNCL 283
>UniRef50_Q3C2H0 Cluster: Reverse transcriptase; n=3; Mauremys
reevesii|Rep: Reverse transcriptase - Chinemys reevesii
(Reeve's turtle)
Length = 535
Score = 34.3 bits (75), Expect = 1.7
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = -2
Query: 517 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKKL 338
LPA+ + +A +DGGL + + + IP + RR + S R A ++ I +
Sbjct: 159 LPANTCNGFLYARSRDGGLGVTRLASLIPSIQARRLHRIAHSKDETIRCIALANDIESEY 218
Query: 337 RWAW 326
R W
Sbjct: 219 RKLW 222
>UniRef50_UPI0000DD7A64 Cluster: PREDICTED: hypothetical protein;
n=2; Euarchontoglires|Rep: PREDICTED: hypothetical
protein - Homo sapiens
Length = 239
Score = 32.7 bits (71), Expect = 5.2
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +2
Query: 53 AGQRRLTPTSTPSRSANAGWEGVDMSVHELHEVPSGYLRASLPNPLC 193
AGQRRL + RS AG E VD H PS YL +++P C
Sbjct: 119 AGQRRLRRAARVCRSPGAGRENVDPDPTSHH--PSLYLDSAIPKAPC 163
>UniRef50_UPI00005A0587 Cluster: PREDICTED: similar to Stromal
interaction molecule 2 precursor; n=1; Canis lupus
familiaris|Rep: PREDICTED: similar to Stromal
interaction molecule 2 precursor - Canis familiaris
Length = 621
Score = 32.7 bits (71), Expect = 5.2
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = -3
Query: 378 QEPPPNLIRFVRNCGGPGNSSAGSAVLTPQRNDHLCA---CFGENICMHLLMDANFXNPH 208
++ PP + +F P S A S+ L R + A C + H A+ +P
Sbjct: 361 EDTPPIVSQFPGTMAKPAGSLARSSSLCRSRRSIVPASPQCPRAQLPPHAPHQAHARHPQ 420
Query: 207 APRHPQSGLGSDARR*PDGTSCSSCTLI 124
P+HPQ L S PD S SSC ++
Sbjct: 421 HPQHPQHSLPSPD---PDILSVSSCPVL 445
>UniRef50_O44324 Cluster: Reverse transcriptase; n=1; Tenebrio
molitor|Rep: Reverse transcriptase - Tenebrio molitor
(Yellow mealworm)
Length = 488
Score = 32.7 bits (71), Expect = 5.2
Identities = 33/138 (23%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Frame = -2
Query: 517 LPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLD--SSPWLVARAAAKSDKIRK 344
LP + + +A+ +DGGL + IP ++ R+ L + P L A +S++
Sbjct: 170 LPVTIADSSIYASQRDGGLGVFCFSRKIPVILRSRWESLQEMADPALGA-VLLQSERCMD 228
Query: 343 KLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQ 164
++ + ++ R DS ++ +R L S G + + ++K++ A
Sbjct: 229 RVS---RLIKEDWRSDS-----EIKNSFRRSLENSWCGGGIHQVGIIKLASKYLLHPPAF 280
Query: 163 ITGRDFVQFVHTHINALP 110
TGRD+V + +NALP
Sbjct: 281 WTGRDYVSTIQLRLNALP 298
>UniRef50_Q2G3A6 Cluster: Putative uncharacterized protein; n=1;
Novosphingobium aromaticivorans DSM 12444|Rep: Putative
uncharacterized protein - Novosphingobium
aromaticivorans (strain DSM 12444)
Length = 323
Score = 32.3 bits (70), Expect = 6.9
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = -2
Query: 514 PADVPKAY---YHAAVQDGGLAIPSVRATIPDLIVR-RFGG 404
P D+P+AY Y AV DGG A ++ + D VR RFGG
Sbjct: 54 PQDLPRAYASYYTHAVVDGGRAERGIKGWLRDCYVRTRFGG 94
>UniRef50_Q841M4 Cluster: Putative secreted peptidase; n=1;
Streptomyces griseochromogenes|Rep: Putative secreted
peptidase - Streptomyces griseochromogenes
Length = 522
Score = 32.3 bits (70), Expect = 6.9
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Frame = +1
Query: 313 CGAVSRPTAVSYESYQIWRRLLPLTMVTSRAPRNASQ*G--PGWSLAPMGSLSRRPELRR 486
C A + P V+ S +WRR PL V A G PG P + +R RR
Sbjct: 422 CSAATAPIHVTPVSTTLWRRPAPLVRVMPDASGRGPPRGAPPGRRSPPTVTAARGTSPRR 481
Query: 487 DNMPWAHPP 513
W+ PP
Sbjct: 482 TPSWWSAPP 490
>UniRef50_UPI00015B4F89 Cluster: PREDICTED: similar to zinc finger
protein, putative; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to zinc finger protein, putative -
Nasonia vitripennis
Length = 539
Score = 31.9 bits (69), Expect = 9.2
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -3
Query: 372 PPPNLIRFVRNCGGPGNSSAGSAVLTPQRNDHLCACF-GENICMHLLMDANFXNPHAPRH 196
PPP+L + + GGPG ++A +A P H+C G++ C + H H
Sbjct: 385 PPPSLAGYPSSLGGPGAAAAAAAAGRP----HVCNWVGGDSYCGKRFATSEELLQHLRSH 440
Query: 195 PQSGLGSDA 169
G+DA
Sbjct: 441 TNIANGADA 449
>UniRef50_Q4SL46 Cluster: Chromosome 17 SCAF14563, whole genome
shotgun sequence; n=2; Euteleostomi|Rep: Chromosome 17
SCAF14563, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 1830
Score = 31.9 bits (69), Expect = 9.2
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = -3
Query: 213 PHAPRHPQSGLGSDARR*PDGTSCSSCTLISTPSHP 106
P PR+P+S LGSD R + CSS +LI+ P P
Sbjct: 1178 PSTPRYPRSMLGSD-RGSLSHSECSSPSLITPPQSP 1212
>UniRef50_Q8SVH7 Cluster: Putative uncharacterized protein
ECU05_1200; n=1; Encephalitozoon cuniculi|Rep: Putative
uncharacterized protein ECU05_1200 - Encephalitozoon
cuniculi
Length = 243
Score = 31.9 bits (69), Expect = 9.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 262 WREHLHASVDGRELRESTRTPTSTKWIRERCAQITGRDFVQFV 134
W E L ++D +E+ + KWIR+ + G ++V+F+
Sbjct: 151 WGEKLFRTIDACNAKEANQNQKIDKWIRKFKEEFLGSEYVRFI 193
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,110,526
Number of Sequences: 1657284
Number of extensions: 12069354
Number of successful extensions: 35890
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 34601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35867
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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