Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303B01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 29 0.32
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|... 28 0.97
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 27 1.7
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 26 3.9
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 25 6.8
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ... 25 6.8
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 6.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.0
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 25 9.0
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 25 9.0
>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.32
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = -2
Query: 379 ARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTP 200
A A + +++++ A K+L+R S+ R ++ +R+ HA+V E R+P
Sbjct: 3 ATAKKSAAQLQREEEEARKKLKRLSKQGGVEGRLPMKRLFRQRAHANVLSDHELEYPRSP 62
Query: 199 TSTKW 185
+ W
Sbjct: 63 SEMDW 67
>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 27.9 bits (59), Expect = 0.97
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +1
Query: 256 LAKTSAQMVVALWSQHG*TCGAVSRPTAVSYESYQIWRRLLPLTMVTSRAPRNASQ 423
L++ ++ LW Q G C ++ V+ +WRR L VT R SQ
Sbjct: 214 LSEEFLSKILKLWGQPGNKCWWINEVIKVNGSLINVWRRKQWLLEVTIMGNRENSQ 269
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 332 PPQFLTNLIRFGGGSCH*PW*RVEPPETPHNEVRDG 439
PP F+T++ + G S H V HNEV DG
Sbjct: 237 PPNFVTSINKAGSSSDHGGELHVTYCPVDHNEVSDG 272
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -3
Query: 363 NLIRFVRNCGGPGNSSAGSAVLTPQRNDHL 274
+L++ ++CG G + G +L P +DH+
Sbjct: 313 SLLQEAQSCGNQGVNFTGDEILVPISDDHV 342
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -2
Query: 343 KLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDG 230
+++W WK R V + FWR L A++ G
Sbjct: 2 RMQWIWKSRRSLQNVFIRRSSQYHKPFWRRPLPATLLG 39
>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +3
Query: 279 GRCVVESTRLNLRSCFQAHRSFLRILSDLAAALATNHGDESSPPKRLTMRSGMVAR 446
G C+VE T ++ + AH ++ + D SS RL +R GM R
Sbjct: 273 GCCIVERTGSDVWAFLLAHDIMFAYRGNILVIKQLIYNDISSTKVRLFIRRGMSIR 328
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 458 DPIGASDHPGPHCEAFRGARLVTMVSGKSRRQI**DS*ETAVGLET 321
DP HP H F +L+ +S +S++ + DS VG T
Sbjct: 395 DPFRKITHPSLHLGKFSTPKLIKRMSLRSKKSLRNDSKSDDVGNST 440
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 155 TGLRAVRAHSYQRPPIPHS 99
TG + AHSY PP P S
Sbjct: 294 TGTSSSMAHSYDSPPSPSS 312
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 47 STAGQRRLTPTSTPS 91
STA QRR++ +STPS
Sbjct: 172 STASQRRMSDSSTPS 186
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 210 HAPRHPQSGLGSD 172
HAP++P SG+G D
Sbjct: 81 HAPQYPNSGIGID 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,785
Number of Sequences: 5004
Number of extensions: 42473
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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