Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303B01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0673 - 5491694-5493102,5493386-5493995 31 0.56
06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000 30 0.98
02_03_0207 - 16421134-16421243,16421977-16422283 30 0.98
01_06_0527 - 30018814-30019638 30 0.98
12_01_0913 + 8882193-8883510,8887633-8887865,8889619-8889871,889... 30 1.3
01_06_0948 - 33242219-33242530,33242632-33242782,33242874-332431... 29 1.7
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 29 3.0
11_02_0016 - 7380933-7382027 28 4.0
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228... 28 4.0
01_06_1726 - 39461451-39461791,39462127-39462183,39462527-394626... 28 4.0
11_06_0742 - 26841041-26841314,26841678-26841775 28 5.2
06_03_0786 - 24579722-24580137,24580518-24580590 28 5.2
02_04_0480 - 23274945-23275196,23275558-23275623,23276709-232768... 28 5.2
01_06_0901 - 32849722-32849745,32849788-32849856,32850817-328509... 28 5.2
12_01_0428 + 3374519-3375423,3376663-3376742,3377206-3377217,337... 27 6.9
09_06_0196 - 21481662-21481720,21481898-21483245 27 6.9
05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357... 27 6.9
04_04_1265 - 32231511-32231813,32231906-32232024,32232511-322327... 27 6.9
04_04_0935 - 29509135-29511732 27 6.9
12_02_0310 - 17358220-17358834 27 9.1
12_01_0776 + 7076218-7076832 27 9.1
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 27 9.1
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 27 9.1
08_02_0098 - 12324664-12324822,12325430-12325543,12325649-123259... 27 9.1
07_03_0782 - 21497949-21498563 27 9.1
04_01_0583 + 7563290-7563904 27 9.1
>11_01_0673 - 5491694-5493102,5493386-5493995
Length = 672
Score = 31.1 bits (67), Expect = 0.56
Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Frame = +2
Query: 110 WEGVDMSVHELHEVPSGYLRASLPNPL-----CGCRGACGFXKFASINRCMQMFSPKQAH 274
W + S E+H P L A P+P CG G C CM+ FS K
Sbjct: 214 WSQANQSWAEVHAEPWAQLYAQPPDPCTPFATCGPFGICN-GNSEQFCDCMESFSQKSPQ 272
Query: 275 RWSLR 289
W L+
Sbjct: 273 DWKLK 277
>06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000
Length = 461
Score = 30.3 bits (65), Expect = 0.98
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -2
Query: 409 GGLDSSPWLVARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHL 248
GGL PW A D +R+ W +RR + + + S RL W HL
Sbjct: 24 GGLKKGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGK--SCRLRWANHL 75
>02_03_0207 - 16421134-16421243,16421977-16422283
Length = 138
Score = 30.3 bits (65), Expect = 0.98
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 56 GQRRLTPTSTPSRSANAGWEGVDMSVHELHEVPSGYLRASLP-NPLCGCRGACGFXKFAS 232
G R + PT TPS +A A W VP+ L P + G AC + K
Sbjct: 65 GTREVAPTVTPSPAAKAVWREPACEARMREAVPTVALSGHAPFEGVLGKNPAC-YSKIGD 123
Query: 233 INRC 244
I+ C
Sbjct: 124 IDAC 127
>01_06_0527 - 30018814-30019638
Length = 274
Score = 30.3 bits (65), Expect = 0.98
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = -3
Query: 309 SAVLTPQRNDHLCACFGENICMHLLMDAN--FXNPHAPRHPQSGLGSDARR*PDGTSCSS 136
SA L P+ + AC+G + +L DAN F + H +G S+ P ++
Sbjct: 69 SAPLDPRVVAAIKACYGLGCDLRILSDANRFFIDTILDHHGLTGYFSEINTNPSAVDAAT 128
Query: 135 CTLISTPSHPAFADREGVEVGV 70
L P H A G +G+
Sbjct: 129 GRLRIAPYHDFHAGPHGCGLGI 150
>12_01_0913 +
8882193-8883510,8887633-8887865,8889619-8889871,
8891281-8891470,8891641-8891773,8891797-8891886
Length = 738
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 191 CGCRGACGFXKFA-SINRCMQMFSPKQAHRWSLR 289
CG G C A SI RC++ FSP WS+R
Sbjct: 311 CGAFGLCDSNAGATSICRCVKGFSPASPAEWSMR 344
>01_06_0948 -
33242219-33242530,33242632-33242782,33242874-33243111,
33243196-33243298,33243323-33243406,33243640-33243815,
33243943-33244074,33248406-33248967,33249084-33249842
Length = 838
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 191 CGCRGACGFXKFASINRCMQMFSPKQAHRWSLRCG 295
CG G C + C++ F+PK W+LR G
Sbjct: 303 CGANGVCDTNNLP-VCSCLRGFTPKSPEAWALRDG 336
>01_05_0740 -
24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 331 AWKQLRRFSRVDSTTQRPSVRLFWREHLHAS--VDGRELRESTRTPTST 191
AW++ R + + +R FW+EHL S +D +L+E + P T
Sbjct: 607 AWEE-ERADEIANIKKRLEEEEFWKEHLQVSGWIDIMQLKERSEQPHGT 654
>11_02_0016 - 7380933-7382027
Length = 364
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 186 GLGSDARR*PDGT-SCSSCTLISTPSHPAFADREGVEVGVSLR*PAVLVR 40
G G+DA DG SC L+ P P+ A REGV + PA+ +R
Sbjct: 13 GCGADATCRVDGIISCRLLDLLDPPVPPSAAPREGVATRDVVVDPAIPLR 62
>04_03_0905 -
20722090-20722207,20722314-20722395,20722698-20722851,
20723026-20723089,20724282-20724404,20725326-20725452,
20725541-20726171
Length = 432
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +3
Query: 249 RCSRQNKRTDGRCVVESTRLNLR--SCFQAHRSFLRILSDLA 368
R Q +R GRC RLNL C+Q H L L D A
Sbjct: 195 RAPPQERRRGGRCTCGVARLNLPFVRCYQTHYLELWTLEDWA 236
>01_06_1726 -
39461451-39461791,39462127-39462183,39462527-39462674,
39462775-39463010,39463025-39463059,39463364-39463497
Length = 316
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -3
Query: 396 RHHG*WQEPPPNLIRFVRNCGG--PGNSSAGSAVLTPQRNDHLCACFGENICMHLLMDA 226
R HG ++ L+R + C G P N++ G + R + +CF +++ L+DA
Sbjct: 243 RQHGRYELARRMLLRSLELCPGHAPANNNLGLVSIAEGRYEEAISCFEKSLQSDPLLDA 301
>11_06_0742 - 26841041-26841314,26841678-26841775
Length = 123
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = -2
Query: 520 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKK 341
R P D A V D + P+ A +PDL++ R LD SP + + A + RK+
Sbjct: 58 RRPGDHRWPEMEANVTDRAASSPNRAAALPDLVILRL--LDGSPARPSLSQASAYPERKR 115
Query: 340 L 338
+
Sbjct: 116 M 116
>06_03_0786 - 24579722-24580137,24580518-24580590
Length = 162
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Frame = -2
Query: 415 RFGGLDSSPWLVARAAAKSDK----IRKKLRWAWKQLRR 311
R G WL AR A S +R+ RW W+ LRR
Sbjct: 114 RGAGSGDGGWLGARGVAGSGGGDLGVRRSCRWMWRGLRR 152
>02_04_0480 -
23274945-23275196,23275558-23275623,23276709-23276851,
23276947-23277063,23277219-23278683,23279561-23280730
Length = 1070
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 291 VESTRLNLRSCFQAHRSFLRILSDLAAALAT 383
+++ +LN SCF+ RS R S+LAAA+ T
Sbjct: 700 IDTVKLNTLSCFEEDRSTTR-ESELAAAIPT 729
>01_06_0901 -
32849722-32849745,32849788-32849856,32850817-32850927,
32851002-32851259
Length = 153
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 415 ASQ*GPGWSLAPMGSLSRRPELRRDNMPW 501
AS P S++P + ++RP L D+ PW
Sbjct: 20 ASTTAPASSVSPAAAAAKRPHLAGDDAPW 48
>12_01_0428 +
3374519-3375423,3376663-3376742,3377206-3377217,
3377337-3377379,3378304-3380332
Length = 1022
Score = 27.5 bits (58), Expect = 6.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -3
Query: 375 EPPPNLIRFVRNCG 334
EPPP L+R++R CG
Sbjct: 855 EPPPQLLRYLRICG 868
>09_06_0196 - 21481662-21481720,21481898-21483245
Length = 468
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +2
Query: 191 CGCRGACGFXKFASINRCMQMFSPKQAHRWS 283
CG G C + + A C+ F P+ WS
Sbjct: 304 CGPYGYCYYSEVAPTCECLDGFEPRSKEEWS 334
>05_05_0381 +
24531622-24532918,24535334-24535468,24535592-24535764,
24536029-24536239,24536287-24536554,24536664-24536814,
24536938-24537246
Length = 847
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 191 CGCRGACGFXKFASINRCMQMFSPKQAHRWSLRCG 295
CG G C + C++ F+P+ W+LR G
Sbjct: 299 CGANGVCDTNSLP-VCSCLRGFAPRSPAAWALRDG 332
>04_04_1265 -
32231511-32231813,32231906-32232024,32232511-32232721,
32232870-32232942,32233329-32233603,32233684-32233831,
32233906-32234143,32234325-32234457,32234852-32235045,
32235114-32235218,32235332-32236640
Length = 1035
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 191 CGCRGACGFXKFASIN-RCMQMFSPKQAHRWSLR 289
CG G C +++ CM FSP RWS+R
Sbjct: 304 CGAFGLCNEDTASTLFCSCMAGFSPVSPSRWSMR 337
>04_04_0935 - 29509135-29511732
Length = 865
Score = 27.5 bits (58), Expect = 6.9
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Frame = -2
Query: 400 DSSPW-LVARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSV----RLF---WREHLH 245
D W ++ A ++S ++R+ L + R+ R+DSTT S+ RLF W + LH
Sbjct: 234 DVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLH 293
Query: 244 ASV 236
A V
Sbjct: 294 AKV 296
>12_02_0310 - 17358220-17358834
Length = 204
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 388 WLVARAAAKSDKIRKKLRWAWKQLRRFSRVDS 293
W+ A AA+ + R++ RW W+ + RV +
Sbjct: 154 WMAAEMAAERSR-RRRWRWRWRWMAAVERVSA 184
>12_01_0776 + 7076218-7076832
Length = 204
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 388 WLVARAAAKSDKIRKKLRWAWKQLRRFSRVDS 293
W+ A AA+ + R++ RW W+ + RV +
Sbjct: 154 WMAAEMAAERSR-RRRWRWRWRWMAAVERVSA 184
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -3
Query: 336 GGPGNSSAGSAVLTPQRNDHLCACFGENICMHLLMDANFXNPHAPRHPQSGLGS 175
GGP S G+ +TP + F N + A+ NP AP+ P +G GS
Sbjct: 432 GGPNPS--GTPAVTPSFPSPVNNQFSPNP-PNAFPSASANNPFAPKQPSTGFGS 482
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 113 EGVDMSVHELHEVPSGYLRASLPNPLCGCRGACGFXKFASINR 241
E V VH L Y+ + + CR +CG +A++NR
Sbjct: 425 EDVMADVHVLSSGLKAYITSYTAKSISVCRESCGGHGYAAVNR 467
>08_02_0098 -
12324664-12324822,12325430-12325543,12325649-12325921,
12326124-12326354,12326444-12326594,12326680-12326759,
12326839-12326913,12326992-12327093,12328000-12328121,
12329726-12329791,12330158-12330201,12330850-12330898,
12330967-12331087,12334631-12334735
Length = 563
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 364 KSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHAS 239
KS I L W + F D++TQR +V+++ E L AS
Sbjct: 301 KSKTINNDLNPIWNEHYEFVVEDTSTQRLTVKIYDDEGLQAS 342
>07_03_0782 - 21497949-21498563
Length = 204
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 388 WLVARAAAKSDKIRKKLRWAWKQLRRFSRVDS 293
W+ A AA+ + R++ RW W+ + RV +
Sbjct: 154 WMAAEMAAERSR-RRRWRWRWRWMAAVERVSA 184
>04_01_0583 + 7563290-7563904
Length = 204
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 388 WLVARAAAKSDKIRKKLRWAWKQLRRFSRVDS 293
W+ A AA+ + R++ RW W+ + RV +
Sbjct: 154 WMAAEMAAERSR-RRRWRWRWRWMAAVERVSA 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,313,924
Number of Sequences: 37544
Number of extensions: 388516
Number of successful extensions: 1308
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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