Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303B01f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 42 4e-04
SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32) 32 0.33
SB_7422| Best HMM Match : Keratin_B2 (HMM E-Value=0.1) 30 1.0
SB_2233| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.43) 29 2.3
SB_58110| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_1146| Best HMM Match : TFIIB (HMM E-Value=0.0016) 29 3.1
SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_38193| Best HMM Match : DUF1279 (HMM E-Value=4.5) 27 7.1
SB_28768| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Frame = -2
Query: 520 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRFGGLDSSPWLVARAAAKSDKIRKK 341
++P D A+++A + DGGL IP + + IP L RF + ++ +++A + R
Sbjct: 309 KVPKDTINAFFYARIADGGLGIPLLTSKIPLLKKSRFENVFNACDAISKALSVDLYFRSN 368
Query: 340 L-RWAWKQLRRFSRVDS--TTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKWIRERC 170
L +W+ + VD + + S + L++ +DGR L E P ++ W+
Sbjct: 369 LEKWSKPVV-----VDGFPISDKSSYNAAFASALYSKIDGRGLSECNLCPEASNWVLNPP 423
Query: 169 AQITGRDFVQFVHTHINAL 113
+ +GR F+ + L
Sbjct: 424 SFQSGRKFIGAIRARAGVL 442
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 41.5 bits (93), Expect = 4e-04
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -2
Query: 520 RLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRRF 410
+LP D A++HAA+ DGGL IPS+R +P L RF
Sbjct: 928 KLPHDTCMAFFHAAILDGGLGIPSLRYLVPLLKRDRF 964
>SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)
Length = 583
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -2
Query: 520 RLPADVPKAYYHAAVQDGGLAIPSVRATIP 431
+LP D +A+++A DGGL +PS+ IP
Sbjct: 364 KLPHDTHRAFFYAHQADGGLNVPSLYHLIP 393
>SB_7422| Best HMM Match : Keratin_B2 (HMM E-Value=0.1)
Length = 136
Score = 30.3 bits (65), Expect = 1.0
Identities = 22/71 (30%), Positives = 31/71 (43%)
Frame = -2
Query: 364 KSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLFWREHLHASVDGRELRESTRTPTSTKW 185
+ +K K RW + RRF RV +PS R F+R R R S P+ ++
Sbjct: 30 RRNKNGMKYRWKYPSSRRFYRVSCV--QPSFRRFYRVSC-VLPSPRSYRVSCVLPSPRRF 86
Query: 184 IRERCAQITGR 152
R C Q + R
Sbjct: 87 YRVSCVQPSPR 97
>SB_2233| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=0.43)
Length = 263
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Frame = +2
Query: 161 YLRASLPNPLCGCRGACG--FXKFASINRC---MQMFSPKQAHRWSLRCGVN 301
Y + LP CGC CG + K N+C +QM+ +CG+N
Sbjct: 22 YYKCGLPYYKCGCYNKCGLPYYKCGRYNKCGRLLQMWKAITNVEGYYKCGLN 73
>SB_58110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 98
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -3
Query: 231 DANFXNPHAPRHPQSGLGSDARR*PDGTSCSSCTLISTPSHPAFAD 94
D HAP+ P+SG G D RR + S P PA D
Sbjct: 43 DGTLAERHAPQAPRSGPGHDKRRTVTVRARESKPTFPPPLKPALTD 88
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 301 VDSTTQRPSVRLFWREHLHASVDGREL 221
++ RPS RL WR H H+ +D ++L
Sbjct: 281 LEENDHRPS-RLHWRNHQHSKLDSKQL 306
>SB_1146| Best HMM Match : TFIIB (HMM E-Value=0.0016)
Length = 352
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 313 RFSRVDSTTQRPSV-RLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQITGRDF 146
RFS S TQ+ V RL++R H+S R +S + WIR++ IT ++F
Sbjct: 275 RFSA--SLTQKEEVVRLYYRTKNHSSKLNRARPQSFAAALTYYWIRQKKIDITLKNF 329
>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2630
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/33 (30%), Positives = 13/33 (39%)
Frame = -3
Query: 381 WQEPPPNLIRFVRNCGGPGNSSAGSAVLTPQRN 283
W P P F+ NC +S +A P N
Sbjct: 481 WYSPAPGSCSFLNNCSSANYTSCANATAAPNSN 513
>SB_38193| Best HMM Match : DUF1279 (HMM E-Value=4.5)
Length = 351
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 376 LPLTMVTSRAPRNASQ*GPGWSLA--PMGSLSRRPELRRDN 492
+P+T +SR R S+ GW P S SRR E R N
Sbjct: 40 IPMTSTSSRGARTESKSCKGWETTDDPNTSESRRQEARERN 80
>SB_28768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 231 DANFXNPHAPRHPQSGLGSDARR 163
D HAP+ P+SG G+D RR
Sbjct: 86 DGTLAERHAPQAPRSGPGNDKRR 108
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,492,962
Number of Sequences: 59808
Number of extensions: 380738
Number of successful extensions: 1326
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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