Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303B01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64600-3|AAK39204.1|  656|Caenorhabditis elegans Temporarily ass...    31   0.50 
U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase prot...    29   2.0  
AL031635-1|CAA21039.2|  487|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p...    27   8.1  
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p...    27   8.1  
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    27   8.1  
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    27   8.1  
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin...    27   8.1  
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr...    27   8.1  
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr...    27   8.1  

>U64600-3|AAK39204.1|  656|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 312 protein.
          Length = 656

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 307 SRVDSTTQRPSVRLFWREHLHASVD 233
           S  DST+ RP++R+F  EH H+  D
Sbjct: 100 SESDSTSSRPAIRVFDEEHYHSESD 124


>U97407-6|AAB52481.1|  751|Caenorhabditis elegans Tyrosinase protein
           4 protein.
          Length = 751

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 345 RNCGGPGNSSAGSAVLTPQRNDHLCACFGENIC 247
           + CGG G +   +     Q+ D+   CF EN+C
Sbjct: 542 QECGGGGTTVTTTTPAPAQQCDNSDGCFNENVC 574


>AL031635-1|CAA21039.2|  487|Caenorhabditis elegans Hypothetical
           protein Y47D3B.1 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 334 WAWKQLR-RFSRVDSTTQRPSVRLFWREHLHASVDGR 227
           WA K +   F R D  T++  +  FWR+    +VDGR
Sbjct: 2   WAMKNIGDTFLRKDINTRQIILGSFWRDEREQNVDGR 38


>Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 517 LPADVPKAYYHAAVQDGGLAIPSVR 443
           +PA V   YY A++Q+G ++ PS R
Sbjct: 850 IPAHVSYHYYQASIQEGPMSPPSSR 874


>Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 517 LPADVPKAYYHAAVQDGGLAIPSVR 443
           +PA V   YY A++Q+G ++ PS R
Sbjct: 850 IPAHVSYHYYQASIQEGPMSPPSSR 874


>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
           protein 70, isoform a protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 277 SVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQIT 158
           S RLF R  + A  D REL    +  T TKW+     +++
Sbjct: 22  SARLFERSRIKALADEREL---VQKKTFTKWVNSHLVRVS 58


>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
           protein 70, isoform b protein.
          Length = 2302

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 277 SVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQIT 158
           S RLF R  + A  D REL    +  T TKW+     +++
Sbjct: 22  SARLFERSRIKALADEREL---VQKKTFTKWVNSHLVRVS 58


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 417  GVSGGSTRHHG*WQEPPPNLIRFVRNCGGPGNSSAG 310
            G  GGS + H   Q+ P   I+++    G GN+  G
Sbjct: 2124 GGGGGSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGG 2159


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 417  GVSGGSTRHHG*WQEPPPNLIRFVRNCGGPGNSSAG 310
            G  GGS + H   Q+ P   I+++    G GN+  G
Sbjct: 2124 GGGGGSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGG 2159


>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
           protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 277 SVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQIT 158
           S RLF R  + A  D REL    +  T TKW+     +++
Sbjct: 22  SARLFERSRIKALADEREL---VQKKTFTKWVNSHLVRVS 58


>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2257

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 277 SVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQIT 158
           S RLF R  + A  D REL    +  T TKW+     +++
Sbjct: 22  SARLFERSRIKALADEREL---VQKKTFTKWVNSHLVRVS 58


>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
           protein.
          Length = 2302

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 277 SVRLFWREHLHASVDGRELRESTRTPTSTKWIRERCAQIT 158
           S RLF R  + A  D REL    +  T TKW+     +++
Sbjct: 22  SARLFERSRIKALADEREL---VQKKTFTKWVNSHLVRVS 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,332,907
Number of Sequences: 27780
Number of extensions: 271947
Number of successful extensions: 722
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)